Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACAM22_RS02720 Genome accession   NZ_AP028929
Coordinates   633090..633560 (+) Length   156 a.a.
NCBI ID   WP_261026331.1    Uniprot ID   -
Organism   Streptococcus sp. SN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 628090..638560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS02715 (MASAN616_05320) rpsF 632788..633078 (+) 291 WP_045612061.1 30S ribosomal protein S6 -
  ACAM22_RS02720 (MASAN616_05330) ssbA 633090..633560 (+) 471 WP_261026331.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACAM22_RS02725 (MASAN616_05340) rpsR 633592..633831 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  ACAM22_RS02730 (MASAN616_05350) - 634031..634534 (+) 504 WP_369606922.1 GNAT family N-acetyltransferase -
  ACAM22_RS02735 (MASAN616_05360) - 634616..636016 (+) 1401 WP_369606923.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACAM22_RS02740 (MASAN616_05370) - 636018..636380 (+) 363 WP_000689591.1 S1 RNA-binding domain-containing protein -
  ACAM22_RS02745 (MASAN616_05380) - 636433..637182 (+) 750 WP_369606924.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACAM22_RS02750 (MASAN616_05390) - 637172..637456 (+) 285 WP_369606925.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17325.17 Da        Isoelectric Point: 4.9164

>NTDB_id=107319 ACAM22_RS02720 WP_261026331.1 633090..633560(+) (ssbA) [Streptococcus sp. SN-1]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTASYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=107319 ACAM22_RS02720 WP_261026331.1 633090..633560(+) (ssbA) [Streptococcus sp. SN-1]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTTGCTAACTGGGCTAAAAAGGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTATTCTGCACCAACTGCAAGCTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378

Multiple sequence alignment