Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI512_RS07955 Genome accession   NZ_CP173614
Coordinates   1703271..1704479 (-) Length   402 a.a.
NCBI ID   WP_064054727.1    Uniprot ID   A0A9X5KS00
Organism   Pseudomonas petroselini strain M14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698271..1709479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI512_RS07915 (ACI512_07905) - 1698293..1699591 (-) 1299 WP_012722153.1 NAD(P)/FAD-dependent oxidoreductase -
  ACI512_RS07920 (ACI512_07910) - 1699652..1699825 (-) 174 WP_046034083.1 DUF3094 family protein -
  ACI512_RS07925 (ACI512_07915) - 1699880..1700509 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  ACI512_RS07930 (ACI512_07920) - 1700614..1701303 (+) 690 WP_236379163.1 energy-coupling factor ABC transporter permease -
  ACI512_RS07935 (ACI512_07925) - 1701379..1701594 (+) 216 WP_012722156.1 hypothetical protein -
  ACI512_RS07940 (ACI512_07930) yacG 1701591..1701791 (-) 201 WP_064054725.1 DNA gyrase inhibitor YacG -
  ACI512_RS07945 (ACI512_07935) coaE 1701788..1702411 (-) 624 WP_012722158.1 dephospho-CoA kinase -
  ACI512_RS07950 (ACI512_07940) pilD 1702408..1703274 (-) 867 WP_329615067.1 A24 family peptidase Machinery gene
  ACI512_RS07955 (ACI512_07945) pilC 1703271..1704479 (-) 1209 WP_064054727.1 type II secretion system F family protein Machinery gene
  ACI512_RS07960 (ACI512_07950) - 1704682..1705095 (+) 414 WP_329615070.1 pilin -
  ACI512_RS07965 (ACI512_07955) - 1705132..1706532 (+) 1401 WP_405121730.1 O-antigen ligase family protein -
  ACI512_RS07975 (ACI512_07965) - 1706813..1707118 (+) 306 WP_064054729.1 DUF6388 family protein -
  ACI512_RS07980 (ACI512_07970) nadC 1708135..1708983 (-) 849 WP_236381878.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43221.54 Da        Isoelectric Point: 10.0492

>NTDB_id=1073184 ACI512_RS07955 WP_064054727.1 1703271..1704479(-) (pilC) [Pseudomonas petroselini strain M14]
MDNAATIYAWEGINRKGRRVSGQTTGHNLALVKAQLRRQGISPGAVYKKSALLPSLAPSIKSADITLLTRQLATLLKAGI
PLLQAFDIIGEGFESRPVRELVQGLKQAIAAGTSLAEALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
RARIKKAMTYPIAVLVVASLVTGVLLIQVVPQFQSLFAGVDGKLPEFTLQVIALSEFTQKAWWVVALGMLAGGLGWRQAY
RTFPDFRLRVDAGLLKAPLAGKLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1073184 ACI512_RS07955 WP_064054727.1 1703271..1704479(-) (pilC) [Pseudomonas petroselini strain M14]
ATGGACAACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGACAAACCACAGGGCA
CAACCTTGCCCTGGTCAAGGCTCAGTTGCGCCGGCAAGGCATCAGCCCAGGGGCTGTGTACAAGAAATCCGCCTTGCTAC
CGAGCCTCGCGCCGTCGATCAAATCGGCGGACATCACCCTGCTTACTCGACAGCTGGCCACGCTGCTGAAGGCTGGAATC
CCTCTTCTACAAGCCTTCGACATTATCGGTGAAGGCTTCGAAAGCCGCCCTGTGCGCGAGCTGGTGCAGGGGTTGAAACA
GGCAATCGCCGCCGGCACCAGCCTGGCCGAGGCGCTGCGCAAACAACCGCGCTATTTCGATGAGCTGTACTGCAACCTGG
TGGCCGCCGGTGAACAGGCTGGCGCACTTGAAACGCTGCTGGAGCGCGTGGCGATCCACCGCGAAAAGAGCGAGCAGCTA
CGGGCCAGGATCAAAAAGGCCATGACCTATCCGATCGCAGTCCTGGTGGTCGCCAGCCTGGTCACCGGCGTGCTGCTGAT
ACAGGTAGTGCCACAGTTCCAGAGTTTGTTCGCCGGGGTCGACGGCAAGCTGCCCGAGTTTACCTTGCAGGTCATCGCCC
TCTCCGAGTTCACGCAAAAAGCCTGGTGGGTCGTGGCCCTGGGCATGCTTGCCGGAGGCTTGGGGTGGCGCCAAGCGTAT
CGCACCTTCCCTGATTTTCGTCTGCGGGTAGACGCCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGAAAAAATC
CGCAGTGGCCCGCTACGCCCGTACGCTTTCCACCACCTTCGCCGCCGGTGTTCCATTGGTGCAGGCGCTGGATTCAGTGG
CCGGCGCCGCAGGATCGGGGCCATTCAGACAGGCAATCGAGCACATGCGACATGATGTATCCACCGGTATGCAATTGAAT
CAATCCATGGCCGCCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACGGCCATCGGCGAAGAGTCGGGCACGTTGGA
CCGCATGCTGGAAAAAGTCGCCAACCATTACGAGGCCGATGTGGACAACCTGGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTATTGGGGGGCATCGTCGGCGCGCTGGTGATCGCCATGTACCTGCCGGTCTTTCAGTTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.747

98.259

0.587
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

50.127

98.259

0.493
  pilC Legionella pneumophila strain ERS1305867

50

98.507

0.493
  pilC Vibrio cholerae strain A1552

41.96

99.005

0.415
  pilG Neisseria gonorrhoeae MS11

40.42

94.776

0.383
  pilC Vibrio campbellii strain DS40M4

39.086

98.01

0.383
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.406

99.751

0.373

Multiple sequence alignment