Detailed information NTG1073183

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI512_RS07950
• Genome accession: NZ_CP173614
• Coordinates: 1702408..1703274 (-)
• Length: 288 a.a.
• NCBI ID: WP_329615067.1
• Uniprot ID: -
• Organism: Pseudomonas petroselini strain M14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1697408..1708274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI512_RS07915 (ACI512_07905)	-	1698293..1699591 (-)	1299	WP_012722153.1	NAD(P)/FAD-dependent oxidoreductase	-
ACI512_RS07920 (ACI512_07910)	-	1699652..1699825 (-)	174	WP_046034083.1	DUF3094 family protein	-
ACI512_RS07925 (ACI512_07915)	-	1699880..1700509 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
ACI512_RS07930 (ACI512_07920)	-	1700614..1701303 (+)	690	WP_236379163.1	energy-coupling factor ABC transporter permease	-
ACI512_RS07935 (ACI512_07925)	-	1701379..1701594 (+)	216	WP_012722156.1	hypothetical protein	-
ACI512_RS07940 (ACI512_07930)	yacG	1701591..1701791 (-)	201	WP_064054725.1	DNA gyrase inhibitor YacG	-
ACI512_RS07945 (ACI512_07935)	coaE	1701788..1702411 (-)	624	WP_012722158.1	dephospho-CoA kinase	-
ACI512_RS07950 (ACI512_07940)	pilD	1702408..1703274 (-)	867	WP_329615067.1	A24 family peptidase	Machinery gene
ACI512_RS07955 (ACI512_07945)	pilC	1703271..1704479 (-)	1209	WP_064054727.1	type II secretion system F family protein	Machinery gene
ACI512_RS07960 (ACI512_07950)	-	1704682..1705095 (+)	414	WP_329615070.1	pilin	-
ACI512_RS07965 (ACI512_07955)	-	1705132..1706532 (+)	1401	WP_405121730.1	O-antigen ligase family protein	-
ACI512_RS07975 (ACI512_07965)	-	1706813..1707118 (+)	306	WP_064054729.1	DUF6388 family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31836.99 Da
• Isoelectric Point: 7.9972

>NTDB_id=1073183 ACI512_RS07950 WP_329615067.1 1702408..1703274(-) (pilD) [Pseudomonas petroselini strain M14]
MNLLLVEQPWAFVAMAGVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGPISARYPLTELACGLISAWVAWHFGFGWQAGAMLVLSWGLLAMSLIDAEHQLLPDALVMP
LLWLGLIVNALGLLTTLPDALWGAVIGYMSLWSVFWLFKLTTGKDGMGHGDFKLLALLGAWGGWQILPMTLLISSLVGVF
VGLILMRLRKARASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1073183 ACI512_RS07950 WP_329615067.1 1702408..1703274(-) (pilD) [Pseudomonas petroselini strain M14]
TTGAACCTGCTATTGGTTGAGCAGCCCTGGGCTTTTGTGGCGATGGCCGGGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCACGAAGTGCTCGGCTTGCCCG
CTGAGCCTGCCGGGCCGACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAACCATCCGATACGCCCATGG
GAAAATATCCCGTTGCTCAGTTACCTGTTTCTGCGCGGCCGCTGCGCCCATTGCCAAGGTCCGATCAGCGCCCGCTATCC
GCTCACTGAACTGGCGTGCGGGTTGATCTCGGCCTGGGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGGCGCGATGC
TGGTGCTGAGTTGGGGCTTGTTGGCGATGAGCCTGATCGATGCCGAGCATCAACTGTTGCCGGATGCACTGGTGATGCCG
CTGCTCTGGCTGGGACTGATCGTCAACGCGCTTGGCCTGCTGACGACGCTACCCGATGCCCTCTGGGGCGCGGTTATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGACCACCGGCAAGGACGGCATGGGCCACGGCGACTTCAAGC
TGCTGGCACTGCTCGGTGCCTGGGGTGGCTGGCAGATCCTGCCGATGACACTGCTGATATCGTCGCTGGTCGGGGTGTTC
GTAGGCTTGATCCTGATGCGCCTGCGCAAGGCCCGGGCGTCGACACCGATGCCGTTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.036	96.528	0.531
pilD	Vibrio campbellii strain DS40M4	51.254	96.875	0.497
pilD	Neisseria gonorrhoeae MS11	50.741	93.75	0.476
pilD	Acinetobacter nosocomialis M2	48.352	94.792	0.458
pilD	Acinetobacter baumannii D1279779	48.352	94.792	0.458