Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACI3L8_RS10155 Genome accession   NZ_CP173391
Coordinates   2198814..2200037 (-) Length   407 a.a.
NCBI ID   WP_404971379.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193814..2205037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS10120 (ACI3L8_10120) rimM 2194058..2194606 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  ACI3L8_RS10125 (ACI3L8_10125) trmD 2194634..2195377 (+) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACI3L8_RS10130 (ACI3L8_10130) rplS 2195419..2195772 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACI3L8_RS10135 (ACI3L8_10135) yacG 2196232..2196426 (-) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  ACI3L8_RS10140 (ACI3L8_10140) zapD 2196489..2197229 (-) 741 WP_012128881.1 cell division protein ZapD -
  ACI3L8_RS10145 (ACI3L8_10145) coaE 2197257..2197871 (-) 615 WP_012128880.1 dephospho-CoA kinase -
  ACI3L8_RS10150 (ACI3L8_10150) pilD 2197872..2198741 (-) 870 WP_045381296.1 A24 family peptidase Machinery gene
  ACI3L8_RS10155 (ACI3L8_10155) pilC 2198814..2200037 (-) 1224 WP_404971379.1 type II secretion system F family protein Machinery gene
  ACI3L8_RS10160 (ACI3L8_10160) pilB 2200072..2201757 (-) 1686 WP_404971380.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACI3L8_RS10165 (ACI3L8_10165) - 2201761..2202240 (-) 480 WP_103412702.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACI3L8_RS10170 (ACI3L8_10170) nadC 2202506..2203393 (-) 888 WP_404971381.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACI3L8_RS10175 (ACI3L8_10175) ampD 2203486..2204037 (+) 552 WP_404971382.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44956.22 Da        Isoelectric Point: 10.3438

>NTDB_id=1072030 ACI3L8_RS10155 WP_404971379.1 2198814..2200037(-) (pilC) [Vibrio campbellii strain LB3]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1072030 ACI3L8_RS10155 WP_404971379.1 2198814..2200037(-) (pilC) [Vibrio campbellii strain LB3]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCAGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTACGAGAGCGCCTCGATGCTCAACACATCAAGATTAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAACAGTCCGGAAACCTATCTCAAGTCTTTGAGCGTTTGGCAACCTACAGGGAAAAA
AGCGAACAGTTGCGCGCGAAAGTAATCAAAGCACTGATTTATCCGGCCATGGTTGTCTTGGTTGCCTTAGGGGTTTCCTA
CCTAATGCTGACCCGGGTCATTCCTGAGTTTGAAAAGATGTTTGTCGGCTTTGGTGCGGATTTACCTGCTTTTACTCAGA
TGGTATTAGACCTCTCTGCTTGGACTCAGAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGCCTGCTTATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCTCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACTAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTAACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTAGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.017

100

0.99
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.211

97.789

0.413
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria gonorrhoeae MS11

39.312

100

0.393
  pilC Legionella pneumophila strain ERS1305867

39.163

99.754

0.391
  pilG Neisseria meningitidis 44/76-A

38.48

100

0.386

Multiple sequence alignment