Detailed information NTG1072029

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI3L8_RS10150
• Genome accession: NZ_CP173391
• Coordinates: 2197872..2198741 (-)
• Length: 289 a.a.
• NCBI ID: WP_045381296.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2192872..2203741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L8_RS10115 (ACI3L8_10115)	rpsP	2193782..2194030 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
ACI3L8_RS10120 (ACI3L8_10120)	rimM	2194058..2194606 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
ACI3L8_RS10125 (ACI3L8_10125)	trmD	2194634..2195377 (+)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACI3L8_RS10130 (ACI3L8_10130)	rplS	2195419..2195772 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
ACI3L8_RS10135 (ACI3L8_10135)	yacG	2196232..2196426 (-)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
ACI3L8_RS10140 (ACI3L8_10140)	zapD	2196489..2197229 (-)	741	WP_012128881.1	cell division protein ZapD	-
ACI3L8_RS10145 (ACI3L8_10145)	coaE	2197257..2197871 (-)	615	WP_012128880.1	dephospho-CoA kinase	-
ACI3L8_RS10150 (ACI3L8_10150)	pilD	2197872..2198741 (-)	870	WP_045381296.1	A24 family peptidase	Machinery gene
ACI3L8_RS10155 (ACI3L8_10155)	pilC	2198814..2200037 (-)	1224	WP_404971379.1	type II secretion system F family protein	Machinery gene
ACI3L8_RS10160 (ACI3L8_10160)	pilB	2200072..2201757 (-)	1686	WP_404971380.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACI3L8_RS10165 (ACI3L8_10165)	-	2201761..2202240 (-)	480	WP_103412702.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACI3L8_RS10170 (ACI3L8_10170)	nadC	2202506..2203393 (-)	888	WP_404971381.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32518.72 Da
• Isoelectric Point: 7.5715

>NTDB_id=1072029 ACI3L8_RS10150 WP_045381296.1 2197872..2198741(-) (pilD) [Vibrio campbellii strain LB3]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCHSSISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1072029 ACI3L8_RS10150 WP_045381296.1 2197872..2198741(-) (pilD) [Vibrio campbellii strain LB3]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTGATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCACTCGTCCATCAGCGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	75	99.654	0.747
pilD	Acinetobacter nosocomialis M2	51.825	94.81	0.491
pilD	Acinetobacter baumannii D1279779	52.03	93.772	0.488
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436