Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABWL43_RS04080 Genome accession   NZ_CP173217
Coordinates   917384..918592 (-) Length   402 a.a.
NCBI ID   WP_404486846.1    Uniprot ID   -
Organism   Pseudomonas sp. HT11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 912384..923592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWL43_RS04040 (ABWL43_04040) - 913279..913452 (-) 174 WP_064450648.1 DUF3094 family protein -
  ABWL43_RS04045 (ABWL43_04045) - 913542..914171 (-) 630 WP_145165302.1 DUF1780 domain-containing protein -
  ABWL43_RS04050 (ABWL43_04050) - 914272..914739 (+) 468 WP_404486840.1 FAD/FMN-containing dehydrogenase -
  ABWL43_RS04055 (ABWL43_04055) - 914736..915425 (+) 690 WP_242194780.1 energy-coupling factor ABC transporter permease -
  ABWL43_RS04060 (ABWL43_04060) - 915492..915707 (+) 216 WP_003171680.1 hypothetical protein -
  ABWL43_RS04065 (ABWL43_04065) yacG 915704..915904 (-) 201 WP_106578604.1 DNA gyrase inhibitor YacG -
  ABWL43_RS04070 (ABWL43_04070) coaE 915901..916524 (-) 624 WP_262210097.1 dephospho-CoA kinase -
  ABWL43_RS04075 (ABWL43_04075) pilD 916521..917387 (-) 867 WP_404486844.1 prepilin peptidase Machinery gene
  ABWL43_RS04080 (ABWL43_04080) pilC 917384..918592 (-) 1209 WP_404486846.1 type II secretion system F family protein Machinery gene
  ABWL43_RS04085 (ABWL43_04085) - 918795..919208 (+) 414 WP_277933556.1 pilin -
  ABWL43_RS04095 (ABWL43_04095) - 919518..919823 (+) 306 WP_242194771.1 DUF6388 family protein -
  ABWL43_RS04100 (ABWL43_04100) nadC 919867..920715 (-) 849 WP_145165288.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ABWL43_RS04105 (ABWL43_04105) - 920961..923117 (+) 2157 WP_404486848.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43676.43 Da        Isoelectric Point: 10.1742

>NTDB_id=1070630 ABWL43_RS04080 WP_404486846.1 917384..918592(-) (pilC) [Pseudomonas sp. HT11]
MNDAATIYAWEGINRKGRRVCGQTTGQNLALIKAQLREQGICPGRIRKKTPRLPSFAPPIKPADIALFTRQLATLLKAGI
PLLQAFDIIGEGFDNRLMRELIKGLKQEIAAGNNLAAALKKQPRYFDDLYCHLIAAGEHAGALETLLERVAIHLEKSQQL
KARIKKAMTYPIAVIVVAGLVSTVLLIHVVPQFQNLFAGVDGKLPGFTLSVIALSEFLQRAWWMVALGLAATIIGLRHAY
RASSGFRRWLDLGLLNAPLAGTLLKKTAVARYARTLSTTFAAGVPLVQALDCVAGAVGNGLFKQAIEHMRHDVSTGMQLH
QSMANSRLFPSMAIQMTAIGEESGTLDRMLEKVANHYEADVQNLVDNLTSLMEPLIIVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1070630 ABWL43_RS04080 WP_404486846.1 917384..918592(-) (pilC) [Pseudomonas sp. HT11]
ATGAATGACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGAGTCTGCGGGCAAACCACAGGCCA
GAACCTGGCGCTGATCAAGGCACAACTGCGCGAGCAAGGGATTTGCCCCGGCCGTATCCGCAAGAAAACCCCACGCCTGC
CAAGCTTCGCCCCGCCGATAAAACCCGCCGATATTGCCCTGTTCACCCGCCAGCTGGCGACATTACTGAAGGCTGGCATA
CCGCTGTTGCAAGCGTTCGACATTATTGGCGAAGGCTTCGACAACCGCCTGATGCGCGAGCTGATAAAGGGCTTGAAACA
GGAAATCGCTGCCGGCAACAACCTGGCGGCAGCGCTGAAAAAACAACCGCGCTATTTCGATGACCTGTATTGCCACCTGA
TTGCCGCCGGCGAGCACGCCGGCGCCCTGGAAACGCTGCTGGAGCGCGTTGCCATCCATCTGGAGAAAAGCCAGCAGCTC
AAGGCGCGCATCAAGAAGGCCATGACCTACCCCATCGCCGTCATCGTGGTTGCAGGCCTGGTCAGCACGGTCTTGCTGAT
CCACGTGGTGCCGCAGTTCCAGAACCTGTTCGCCGGCGTCGATGGCAAACTGCCAGGCTTCACGCTGAGTGTCATTGCCT
TGTCCGAGTTCCTGCAGCGTGCCTGGTGGATGGTGGCACTGGGTTTGGCCGCGACAATTATCGGGCTGCGCCACGCCTAT
CGGGCATCTTCCGGTTTTCGCCGTTGGCTGGACCTCGGTTTGTTGAACGCGCCCCTGGCAGGCACACTGCTGAAAAAAAC
CGCGGTTGCCCGCTACGCCCGCACACTCTCAACGACTTTCGCCGCGGGCGTGCCGTTGGTGCAGGCGCTGGATTGCGTGG
CGGGGGCGGTCGGAAATGGGTTGTTCAAACAGGCGATAGAGCATATGCGTCACGATGTATCCACTGGCATGCAGTTGCAC
CAATCCATGGCCAACAGCCGCCTGTTTCCCAGTATGGCAATCCAGATGACGGCCATCGGGGAAGAATCGGGAACCCTGGA
TCGCATGCTGGAAAAAGTCGCCAATCACTACGAGGCCGATGTGCAAAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CCCTGATCATAGTGGTATTGGGCGGCATCGTCGGCGCACTGGTGATCGCCATGTACCTGCCAGTGTTCCAGCTGGGGTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.481

98.259

0.575
  pilC Acinetobacter baylyi ADP1

51.515

98.507

0.507
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

47.848

98.259

0.47
  pilG Neisseria gonorrhoeae MS11

41.623

95.025

0.396
  pilG Neisseria meningitidis 44/76-A

40.838

95.025

0.388
  pilC Vibrio cholerae strain A1552

39.141

98.507

0.386
  pilC Thermus thermophilus HB27

37.656

99.751

0.376
  pilC Vibrio campbellii strain DS40M4

37.563

98.01

0.368

Multiple sequence alignment