Detailed information NTG1070629

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABWL43_RS04075
• Genome accession: NZ_CP173217
• Coordinates: 916521..917387 (-)
• Length: 288 a.a.
• NCBI ID: WP_404486844.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HT11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 911521..922387

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABWL43_RS04035 (ABWL43_04035)	-	911920..913218 (-)	1299	WP_404486838.1	NAD(P)/FAD-dependent oxidoreductase	-
ABWL43_RS04040 (ABWL43_04040)	-	913279..913452 (-)	174	WP_064450648.1	DUF3094 family protein	-
ABWL43_RS04045 (ABWL43_04045)	-	913542..914171 (-)	630	WP_145165302.1	DUF1780 domain-containing protein	-
ABWL43_RS04050 (ABWL43_04050)	-	914272..914739 (+)	468	WP_404486840.1	FAD/FMN-containing dehydrogenase	-
ABWL43_RS04055 (ABWL43_04055)	-	914736..915425 (+)	690	WP_242194780.1	energy-coupling factor ABC transporter permease	-
ABWL43_RS04060 (ABWL43_04060)	-	915492..915707 (+)	216	WP_003171680.1	hypothetical protein	-
ABWL43_RS04065 (ABWL43_04065)	yacG	915704..915904 (-)	201	WP_106578604.1	DNA gyrase inhibitor YacG	-
ABWL43_RS04070 (ABWL43_04070)	coaE	915901..916524 (-)	624	WP_262210097.1	dephospho-CoA kinase	-
ABWL43_RS04075 (ABWL43_04075)	pilD	916521..917387 (-)	867	WP_404486844.1	prepilin peptidase	Machinery gene
ABWL43_RS04080 (ABWL43_04080)	pilC	917384..918592 (-)	1209	WP_404486846.1	type II secretion system F family protein	Machinery gene
ABWL43_RS04085 (ABWL43_04085)	-	918795..919208 (+)	414	WP_277933556.1	pilin	-
ABWL43_RS04095 (ABWL43_04095)	-	919518..919823 (+)	306	WP_242194771.1	DUF6388 family protein	-
ABWL43_RS04100 (ABWL43_04100)	nadC	919867..920715 (-)	849	WP_145165288.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31735.05 Da
• Isoelectric Point: 8.2438

>NTDB_id=1070629 ABWL43_RS04075 WP_404486844.1 916521..917387(-) (pilD) [Pseudomonas sp. HT11]
MNPLLNEQPWLFIGMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAQEVLGLPADPAGPAYNLMRPHSCCPRCNHPIRAW
ENIPLLSYLLLKGRCAHCREPISARYPFTELAGALVSAAVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSVGLLVTLPDALWGAVIGYMSLWTVFWLFKVITGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLLGVL
AGLILLRLRKPQASAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=1070629 ABWL43_RS04075 WP_404486844.1 916521..917387(-) (pilD) [Pseudomonas sp. HT11]
TTGAACCCGTTGCTGAATGAACAACCGTGGCTCTTTATCGGGATGGCGCTGGTGCTGGGCCTGATTGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCGCCCAGGCCCAGGAGGTGCTCGGTTTGCCTG
CTGACCCTGCGGGCCCGGCTTACAACCTGATGCGCCCCCATTCCTGCTGCCCCCGATGCAATCATCCGATTCGCGCGTGG
GAAAATATTCCTCTGCTCAGCTACCTGCTGCTCAAGGGCCGTTGTGCCCATTGCCGAGAACCTATCAGTGCCCGCTACCC
GTTCACCGAACTTGCCGGCGCGCTGGTCTCGGCGGCGGTGGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGCTGAGCTGGGGGTTGCTGGCGATGAGCCTGATCGATGTGGATCATCAGCTGCTGCCCGACGTTCTGGTGCTGCCG
CTGTTATGGCTGGGGCTGATCCTCAACAGTGTTGGCTTGCTGGTGACGCTGCCGGATGCGCTCTGGGGTGCGGTCATTGG
GTATATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGGTGATCACCGGCAAGGACGGCATGGGCTATGGCGATTTCAAGT
TGTTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAGATTCTGCCGATGACACTGCTGATGTCTTCGTTGCTCGGGGTGCTT
GCCGGGCTCATCCTGCTGCGCTTGCGCAAGCCCCAGGCGTCGGCCCCAATGCCGTTTGGTCCGTGTCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	50.896	96.875	0.493
pilD	Acinetobacter nosocomialis M2	50	95.139	0.476
pilD	Acinetobacter baumannii D1279779	50	95.139	0.476
pilD	Neisseria gonorrhoeae MS11	50	88.889	0.444