Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACIHQS_RS01100 Genome accession   NZ_CP173025
Coordinates   228231..229457 (-) Length   408 a.a.
NCBI ID   WP_061397953.1    Uniprot ID   A0A150HZP0
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223231..234457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS01075 (ACIHQS_01075) - 224580..224906 (+) 327 WP_004876475.1 pyrimidine/purine nucleoside phosphorylase -
  ACIHQS_RS01080 (ACIHQS_01080) rlmB 225075..225824 (+) 750 WP_004876476.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACIHQS_RS01085 (ACIHQS_01085) - 225856..226767 (+) 912 WP_007480121.1 DMT family transporter -
  ACIHQS_RS01090 (ACIHQS_01090) coaE 226764..227369 (-) 606 WP_404229814.1 dephospho-CoA kinase -
  ACIHQS_RS01095 (ACIHQS_01095) pilD 227371..228231 (-) 861 WP_404229817.1 prepilin peptidase Machinery gene
  ACIHQS_RS01100 (ACIHQS_01100) pilC 228231..229457 (-) 1227 WP_061397953.1 type II secretion system F family protein Machinery gene
  ACIHQS_RS01105 (ACIHQS_01105) pilB 229482..231200 (-) 1719 WP_404229820.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACIHQS_RS01110 (ACIHQS_01110) tpiA 231555..232346 (+) 792 WP_404229823.1 triose-phosphate isomerase -
  ACIHQS_RS01115 (ACIHQS_01115) secG 232359..232688 (+) 330 WP_404229826.1 preprotein translocase subunit SecG -
  ACIHQS_RS01135 (ACIHQS_01135) rimP 233310..233834 (+) 525 WP_404229829.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45091.72 Da        Isoelectric Point: 9.9186

>NTDB_id=1069986 ACIHQS_RS01100 WP_061397953.1 228231..229457(-) (pilC) [Acinetobacter venetianus strain AVYS1]
MAAKKAQMMPTFAYEGVDRKGLKIKGELPARNMALAKVTLRKQGIAIKNIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGLKGEVESGNTFAGALRKYPLYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVICVAVIVTIILMVKVVPVFESVFSSFGADLPAFTKMVVNMSNWMQKYWFMLILTIAVVIT
VFLESKKRSKKFRDFLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1069986 ACIHQS_RS01100 WP_061397953.1 228231..229457(-) (pilC) [Acinetobacter venetianus strain AVYS1]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTCGCTTATGAAGGGGTTGATCGAAAAGGGTTAAAAATCAAAGGGGA
ATTACCTGCTCGCAATATGGCTTTAGCCAAAGTTACTTTACGAAAACAAGGAATAGCCATTAAGAATATTCGTGAAAAAC
GCAAAAATATTCTTGAAGGGTTAATGAAAAAGAAAGTTTCAACTTTAGATATAACTGTTTTCACTCGTCAATTAGCGACA
ATGATGAAAGCTGGCGTTCCTTTAGTTCAAGGCTTTGAAATTGTTGCTGAAGGATTAGAAAATCCTGCTATGCGTGAAGT
TGTATTAGGTTTAAAAGGTGAAGTTGAAAGCGGTAATACTTTTGCAGGGGCCTTACGTAAATATCCACTATATTTTGATA
ACCTATTTTGTTCATTAGTTGAATCTGGTGAACAATCTGGTGCTCTTGAAACGATGTTAGACCGTGTAGCAATTTATAAA
GAAAAAAGTGAGCTTCTTAAACAAAAAATTAAGAAAGCGATGAAATACCCTATCACAGTTATCTGTGTTGCAGTTATTGT
AACCATTATCCTAATGGTCAAAGTAGTTCCTGTTTTTGAAAGTGTATTCTCCTCCTTCGGAGCAGATTTGCCAGCATTTA
CTAAAATGGTCGTCAATATGTCGAATTGGATGCAAAAATATTGGTTTATGCTGATTCTTACAATTGCTGTTGTGATTACT
GTCTTCTTGGAATCAAAAAAACGTAGTAAAAAATTTAGAGATTTTTTAGATAAAATGGCACTTAAAGCCCCAATTTTTGG
CGACCTCGTTTATAAGGCAATTATCGCACGATATAGTCGCACACTTGCGACCACCTTTGCCGCAGGCGTACCACTGATTG
ATGCACTGGAATCTACAGCTGGTGCAACTAATAATGTCATTTATGAAGAAGCCGTAATGAAAATTCGAGAGGATGTTGCG
ACTGGTCAACAACTGCAATTTGCAATGCGCGTTTCAAATCGTTTTCCATCGATGGCAATCCAAATGGTTGCTATTGGTGA
GGAGTCTGGTGCTTTAGATAGCATGCTCGATAAAGTGGCAACACATTTTGAAAATGAGGTTGATAATGCTGTTGATGGCT
TAACCTCTATGATGGAACCTTTAATTATGGCTATTTTAGGGGTATTGGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCTGTAGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150HZP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.461

100

0.895
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.015

99.755

0.419
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4

Multiple sequence alignment