Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACIHQS_RS01095 Genome accession   NZ_CP173025
Coordinates   227371..228231 (-) Length   286 a.a.
NCBI ID   WP_404229817.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 222371..233231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS01075 (ACIHQS_01075) - 224580..224906 (+) 327 WP_004876475.1 pyrimidine/purine nucleoside phosphorylase -
  ACIHQS_RS01080 (ACIHQS_01080) rlmB 225075..225824 (+) 750 WP_004876476.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACIHQS_RS01085 (ACIHQS_01085) - 225856..226767 (+) 912 WP_007480121.1 DMT family transporter -
  ACIHQS_RS01090 (ACIHQS_01090) coaE 226764..227369 (-) 606 WP_404229814.1 dephospho-CoA kinase -
  ACIHQS_RS01095 (ACIHQS_01095) pilD 227371..228231 (-) 861 WP_404229817.1 prepilin peptidase Machinery gene
  ACIHQS_RS01100 (ACIHQS_01100) pilC 228231..229457 (-) 1227 WP_061397953.1 type II secretion system F family protein Machinery gene
  ACIHQS_RS01105 (ACIHQS_01105) pilB 229482..231200 (-) 1719 WP_404229820.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACIHQS_RS01110 (ACIHQS_01110) tpiA 231555..232346 (+) 792 WP_404229823.1 triose-phosphate isomerase -
  ACIHQS_RS01115 (ACIHQS_01115) secG 232359..232688 (+) 330 WP_404229826.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32008.45 Da        Isoelectric Point: 6.8119

>NTDB_id=1069985 ACIHQS_RS01095 WP_404229817.1 227371..228231(-) (pilD) [Acinetobacter venetianus strain AVYS1]
MQQVISYLVDNPTALYIAVGIFSLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHPEQPIIDEEKLTLSKPASTCPKCHNQ
IHWYQNIPVISWLILRGKCGTCQNPISIRYPFIELLTMVCSLIVVLVFGATIQMLLGLLLTWVLITLTFIDFDTQLLPDR
FTLPLAAMGLGINTFAIYTSPSAAIWGYLVGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLMLPLIILLSSA
VGAIIGIILMKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1069985 ACIHQS_RS01095 WP_404229817.1 227371..228231(-) (pilD) [Acinetobacter venetianus strain AVYS1]
ATGCAACAAGTCATTTCATATTTAGTTGATAACCCAACTGCGCTTTATATTGCAGTTGGGATTTTTAGTTTATGTATTGG
CAGCTTTCTAAATGTTGTTATTTTTCGAACACCAAAAATGATGGAACAGGAATGGCATCAAGAATGTCAAATGCTTTTAC
ATCCTGAACAACCCATCATTGATGAAGAAAAACTAACGCTAAGTAAACCGGCTTCAACTTGCCCAAAATGTCATAATCAA
ATCCATTGGTATCAAAATATTCCAGTTATCAGTTGGCTTATACTACGCGGCAAATGCGGCACTTGTCAGAATCCGATTAG
TATTCGATACCCTTTTATTGAATTACTCACAATGGTCTGCTCATTAATCGTTGTCCTTGTATTTGGTGCAACGATTCAAA
TGCTGTTGGGTCTATTATTGACGTGGGTATTGATCACCTTAACGTTTATAGATTTTGATACTCAACTGCTACCCGACAGA
TTTACGCTGCCACTCGCAGCAATGGGTTTAGGGATTAATACTTTTGCAATTTACACATCACCAAGTGCTGCAATTTGGGG
CTATTTAGTTGGCTTCTTGTGCTTATGGATTGTTTACTATCTGTTTAAACTTATCACGGGCAAAGAAGGCATGGGTTACG
GTGACTTTAAGTTACTTGCAGCCTTAGGCGCTTGGATGGGACCACTGATGTTACCGCTCATCATCCTACTTTCCTCAGCA
GTTGGTGCCATTATCGGTATTATTTTAATGAAAATGCGCGGTGAAAATCAGCCTTTTGCATTTGGTCCCTATATTGCAAT
TGCGGGTTGGATTGCCTTCTTATGGGGTGATCAAATTATGAAAGTATATTTAGGTGGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

83.217

100

0.832
  pilD Acinetobacter baumannii D1279779

82.867

100

0.829
  pilD Vibrio campbellii strain DS40M4

53.933

93.357

0.504
  pilD Vibrio cholerae strain A1552

53.358

93.706

0.5
  pilD Neisseria gonorrhoeae MS11

46.52

95.455

0.444

Multiple sequence alignment