Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACG2XO_RS02875 Genome accession   NZ_CP172558
Coordinates   629338..630561 (+) Length   407 a.a.
NCBI ID   WP_410499331.1    Uniprot ID   -
Organism   Chitinibacter sp. S2-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624338..635561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2XO_RS02855 (ACG2XO_02855) rpsP 624821..625066 (-) 246 WP_157670806.1 30S ribosomal protein S16 -
  ACG2XO_RS02860 (ACG2XO_02860) ffh 625166..626509 (-) 1344 WP_410499328.1 signal recognition particle protein -
  ACG2XO_RS02865 (ACG2XO_02865) - 626591..627397 (+) 807 WP_410499329.1 inner membrane protein YpjD -
  ACG2XO_RS02870 (ACG2XO_02870) pilB 627618..629324 (+) 1707 WP_410499330.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACG2XO_RS02875 (ACG2XO_02875) pilC 629338..630561 (+) 1224 WP_410499331.1 type II secretion system F family protein Machinery gene
  ACG2XO_RS02880 (ACG2XO_02880) pilD 630561..631418 (+) 858 WP_410499332.1 prepilin peptidase Machinery gene
  ACG2XO_RS02885 (ACG2XO_02885) coaE 631425..632030 (+) 606 WP_410499333.1 dephospho-CoA kinase -
  ACG2XO_RS02890 (ACG2XO_02890) zapD 632067..632825 (+) 759 WP_410499334.1 cell division protein ZapD -
  ACG2XO_RS02895 (ACG2XO_02895) - 632867..633010 (+) 144 WP_410499335.1 DNA gyrase inhibitor YacG -
  ACG2XO_RS02900 (ACG2XO_02900) - 633118..633936 (-) 819 WP_410499336.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  ACG2XO_RS02905 (ACG2XO_02905) rplQ 634009..634389 (-) 381 WP_410499337.1 50S ribosomal protein L17 -
  ACG2XO_RS02910 (ACG2XO_02910) - 634416..635399 (-) 984 WP_410499338.1 DNA-directed RNA polymerase subunit alpha -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44581.58 Da        Isoelectric Point: 10.0011

>NTDB_id=1068025 ACG2XO_RS02875 WP_410499331.1 629338..630561(+) (pilC) [Chitinibacter sp. S2-10]
MAVKGKSPAAKEFMFRWEGKDRTNKVVKGEMRAVSDSVVKSTLRRQGINVSSIKKIRMGTGRKISELDIAMFTRQLATML
KSGVPLLTAFDIVAKGHSNPSVTKLLIDIKTDIETGSSLTQAFRKHPNQFDNLYCNLVQAGEQAGILDALLARLATYKEK
ILGVKKKIKSAMFYPTAVLVAAFVITAVIMIFVIPAFKDLFSSFGADLPGPTLLVMAISDYFVSYWYLIFGSIFGGIYFF
LQAWKKSEKMQFFMDRLLLKLPVFGQIIKNATIARWTRTLATMFAAGVPLVESLESVGGAAGNIVYKLATQRIQAEVSTG
TSLTTAMQNANVFPNMVMQMTSIGEESGSLDSMLSKVADYYEEEVDNAVEALASLMEPIIMVVLGTLIGGLVVAMYLPIF
KMGQAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1068025 ACG2XO_RS02875 WP_410499331.1 629338..630561(+) (pilC) [Chitinibacter sp. S2-10]
ATGGCAGTCAAAGGGAAATCGCCTGCGGCCAAGGAGTTTATGTTCCGCTGGGAAGGCAAGGATCGTACCAACAAGGTCGT
TAAGGGTGAAATGCGCGCAGTTAGCGATTCGGTCGTCAAGAGTACACTGCGTCGTCAAGGCATCAACGTTAGCAGCATCA
AAAAAATTCGCATGGGTACAGGCCGCAAAATTTCCGAACTGGATATCGCCATGTTTACCCGTCAACTGGCGACCATGCTT
AAATCTGGCGTTCCTTTACTCACCGCGTTTGATATCGTCGCAAAAGGCCACAGCAATCCATCTGTGACCAAACTACTGAT
AGATATTAAAACCGATATTGAAACCGGCTCATCATTGACTCAGGCATTCCGTAAACATCCCAACCAGTTCGACAATCTTT
ATTGCAATCTGGTTCAGGCTGGGGAGCAGGCGGGTATTCTGGACGCTTTACTCGCGCGTCTAGCCACCTATAAAGAGAAA
ATTCTGGGCGTTAAAAAGAAAATCAAGTCGGCCATGTTTTACCCGACCGCTGTTCTTGTCGCCGCCTTTGTCATCACGGC
AGTTATTATGATTTTCGTCATTCCGGCCTTTAAAGACCTGTTTTCCAGCTTTGGCGCCGACCTTCCTGGCCCCACCCTAC
TGGTCATGGCCATTTCGGATTATTTCGTCAGCTACTGGTATCTCATTTTCGGCAGCATCTTTGGCGGGATATATTTCTTC
CTGCAGGCTTGGAAAAAATCCGAGAAAATGCAATTTTTTATGGATCGATTATTACTTAAACTACCTGTATTTGGCCAAAT
TATTAAAAATGCAACGATCGCACGCTGGACACGAACCCTGGCGACCATGTTCGCAGCTGGCGTACCCCTGGTTGAATCAC
TTGAATCAGTCGGTGGGGCTGCGGGCAATATCGTTTATAAGCTGGCAACCCAGCGCATTCAAGCGGAAGTCAGCACCGGT
ACCAGCCTAACGACAGCCATGCAGAATGCCAATGTATTTCCGAATATGGTCATGCAGATGACCTCGATCGGTGAAGAGTC
AGGCTCACTTGACTCAATGCTCAGCAAGGTGGCCGACTACTACGAAGAAGAAGTCGATAATGCCGTCGAAGCACTTGCTA
GCCTGATGGAACCTATCATTATGGTCGTCCTAGGTACACTCATTGGTGGCTTGGTCGTTGCAATGTACCTGCCAATTTTC
AAAATGGGTCAAGCGGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.03

97.297

0.516
  pilC Pseudomonas stutzeri DSM 10701

51.372

98.526

0.506
  pilC Acinetobacter baumannii D1279779

50.882

97.543

0.496
  pilC Acinetobacter baylyi ADP1

50.251

97.789

0.491
  pilG Neisseria gonorrhoeae MS11

50.125

98.034

0.491
  pilG Neisseria meningitidis 44/76-A

49.624

98.034

0.486
  pilC Vibrio cholerae strain A1552

38.945

97.789

0.381
  pilC Vibrio campbellii strain DS40M4

36.765

100

0.369

Multiple sequence alignment