Detailed information NTG1068026

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACG2XO_RS02880
• Genome accession: NZ_CP172558
• Coordinates: 630561..631418 (+)
• Length: 285 a.a.
• NCBI ID: WP_410499332.1
• Uniprot ID: -
• Organism: Chitinibacter sp. S2-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 625561..636418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG2XO_RS02865 (ACG2XO_02865)	-	626591..627397 (+)	807	WP_410499329.1	inner membrane protein YpjD	-
ACG2XO_RS02870 (ACG2XO_02870)	pilB	627618..629324 (+)	1707	WP_410499330.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACG2XO_RS02875 (ACG2XO_02875)	pilC	629338..630561 (+)	1224	WP_410499331.1	type II secretion system F family protein	Machinery gene
ACG2XO_RS02880 (ACG2XO_02880)	pilD	630561..631418 (+)	858	WP_410499332.1	prepilin peptidase	Machinery gene
ACG2XO_RS02885 (ACG2XO_02885)	coaE	631425..632030 (+)	606	WP_410499333.1	dephospho-CoA kinase	-
ACG2XO_RS02890 (ACG2XO_02890)	zapD	632067..632825 (+)	759	WP_410499334.1	cell division protein ZapD	-
ACG2XO_RS02895 (ACG2XO_02895)	-	632867..633010 (+)	144	WP_410499335.1	DNA gyrase inhibitor YacG	-
ACG2XO_RS02900 (ACG2XO_02900)	-	633118..633936 (-)	819	WP_410499336.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
ACG2XO_RS02905 (ACG2XO_02905)	rplQ	634009..634389 (-)	381	WP_410499337.1	50S ribosomal protein L17	-
ACG2XO_RS02910 (ACG2XO_02910)	-	634416..635399 (-)	984	WP_410499338.1	DNA-directed RNA polymerase subunit alpha	-
ACG2XO_RS02915 (ACG2XO_02915)	rpsD	635433..636056 (-)	624	WP_179355197.1	30S ribosomal protein S4	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30693.57 Da
• Isoelectric Point: 6.9282

>NTDB_id=1068026 ACG2XO_RS02880 WP_410499332.1 630561..631418(+) (pilD) [Chitinibacter sp. S2-10]
MIETFTSNTGIILSCAVLGLLVGSFLNVVIHRLPIMLENEFKLECQALTGDENQEPPPPAKYNLVVPRSACPHCQHQITA
LENIPVLSWIMLGGKCSQCKAPISLRYPFIEALTSLISAGMAAHFGYGMPLLGALLLSWALLSLIMIDADTYLLPDYITL
PLVWLGLLFNSQQTFTTLPMAVYGAMAGYLSLWSIYWLFKLITGKEGMGYGDFKLLAALGAWLGITALPAIVLLASFSGA
IIGIAMIAGAKHGWNKPMPFGPYLGIAGLLALVWGSKISSALYGI

Nucleotide

• Length: 858 bp

>NTDB_id=1068026 ACG2XO_RS02880 WP_410499332.1 630561..631418(+) (pilD) [Chitinibacter sp. S2-10]
ATGATTGAAACTTTCACTAGCAATACCGGAATAATTCTCAGCTGCGCCGTGCTTGGGCTATTGGTGGGTAGTTTTTTGAA
TGTCGTCATTCATCGACTGCCCATCATGCTGGAGAATGAATTCAAACTTGAATGTCAAGCGCTCACAGGAGATGAAAATC
AAGAACCGCCACCTCCTGCCAAATACAATTTGGTCGTACCACGCTCGGCCTGCCCACACTGCCAGCATCAAATCACAGCA
CTGGAGAATATCCCCGTACTGAGCTGGATCATGTTGGGTGGAAAATGCAGCCAGTGCAAAGCACCAATAAGCTTACGATA
TCCCTTCATTGAAGCATTAACCAGTCTTATTTCCGCCGGAATGGCCGCCCATTTCGGCTATGGGATGCCATTATTAGGCG
CATTATTGCTCAGTTGGGCGCTCCTCTCACTCATCATGATTGATGCGGACACTTATTTACTGCCCGACTACATTACCCTG
CCCTTGGTTTGGTTGGGGCTATTATTTAATTCTCAGCAAACCTTTACGACACTACCCATGGCAGTATATGGCGCAATGGC
AGGCTACCTAAGCCTTTGGAGCATATACTGGCTATTTAAACTCATTACCGGCAAGGAAGGGATGGGTTATGGCGATTTTA
AACTTCTTGCTGCATTGGGTGCTTGGCTCGGCATCACCGCACTTCCCGCCATTGTTTTATTGGCCTCGTTCAGCGGTGCA
ATCATTGGTATTGCCATGATCGCAGGCGCAAAGCACGGATGGAATAAACCGATGCCTTTTGGCCCCTATCTTGGCATTGC
CGGCCTATTGGCTCTGGTTTGGGGCTCTAAAATTTCATCCGCATTGTACGGAATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.554	93.684	0.53
pilD	Acinetobacter baumannii D1279779	48.772	100	0.488
pilD	Acinetobacter nosocomialis M2	48.421	100	0.484
pilD	Vibrio campbellii strain DS40M4	51.119	94.035	0.481
pilD	Neisseria gonorrhoeae MS11	48.263	90.877	0.439