Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACG1BZ_RS17890 Genome accession   NZ_CP172449
Coordinates   4027506..4028720 (+) Length   404 a.a.
NCBI ID   WP_413663001.1    Uniprot ID   -
Organism   Microbulbifer sp. CNSA002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4022506..4033720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG1BZ_RS17875 (ACG1BZ_17875) - 4023882..4024628 (-) 747 WP_413662998.1 hypothetical protein -
  ACG1BZ_RS17880 (ACG1BZ_17880) - 4024694..4025251 (-) 558 WP_413662999.1 pilin -
  ACG1BZ_RS17885 (ACG1BZ_17885) pilB 4025637..4027349 (+) 1713 WP_413663000.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACG1BZ_RS17890 (ACG1BZ_17890) pilC 4027506..4028720 (+) 1215 WP_413663001.1 type II secretion system F family protein Machinery gene
  ACG1BZ_RS17895 (ACG1BZ_17895) - 4028726..4029610 (+) 885 WP_413663002.1 prepilin peptidase -
  ACG1BZ_RS17900 (ACG1BZ_17900) coaE 4029721..4030329 (+) 609 WP_413663003.1 dephospho-CoA kinase -
  ACG1BZ_RS17905 (ACG1BZ_17905) yacG 4030649..4030864 (+) 216 WP_108734183.1 DNA gyrase inhibitor YacG -
  ACG1BZ_RS17910 (ACG1BZ_17910) mutT 4030918..4031316 (-) 399 WP_413663004.1 8-oxo-dGTP diphosphatase MutT -
  ACG1BZ_RS17915 (ACG1BZ_17915) argJ 4031326..4032528 (-) 1203 WP_413663005.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43494.22 Da        Isoelectric Point: 9.8526

>NTDB_id=1067902 ACG1BZ_RS17890 WP_413663001.1 4027506..4028720(+) (pilC) [Microbulbifer sp. CNSA002]
MANATAVAYIYKGVDSKGAKIQGEINGTSPALVKAQLRKQGIIANRVQKKPTPLFGGGRKKVKPADIALFTRQMATMMKA
GVPLVQSFEIVADGMDNQGVKELVYKIRTEVASGTAFADALRKHPMYFDDLFCNLVASGEQSGALETMLDRIATYKEKTE
SLKAKIKKAMTYPIAVIAVALVVTSILLIKVVPQFATTFSSFGADLPAFTKLVVSMSEWMQANWFIALVITIVGIGGTIE
AKKRNKKVAEFFDRLILKLPIIGQITYNSISARFARTLSTTFAAGVPLIDALKSVAGATGNSIYTEATLKIRDSVATGIP
LNTALRTSGVFPTMLIQMTAIGEESGALDEMLGKSADYYEEAVDNMVDNLTTLLEPLIMAVLGILVGGLMIAMYLPIFQL
GQVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1067902 ACG1BZ_RS17890 WP_413663001.1 4027506..4028720(+) (pilC) [Microbulbifer sp. CNSA002]
ATGGCCAACGCTACAGCAGTTGCATACATCTACAAGGGAGTAGACAGTAAAGGGGCTAAAATTCAAGGTGAGATCAACGG
TACGAGCCCAGCACTGGTAAAGGCCCAGCTGCGCAAACAGGGAATCATCGCCAATCGCGTCCAGAAGAAGCCTACCCCTC
TCTTCGGCGGCGGCAGGAAAAAAGTCAAACCTGCCGATATCGCACTGTTTACTCGGCAGATGGCTACCATGATGAAGGCT
GGTGTACCTCTGGTACAGAGCTTTGAGATTGTTGCTGACGGCATGGATAACCAGGGGGTCAAAGAATTAGTTTATAAAAT
ACGCACCGAAGTTGCCTCGGGCACGGCATTTGCAGATGCACTGCGTAAACACCCGATGTACTTTGACGATTTATTCTGCA
ACTTAGTTGCCTCAGGTGAACAGTCTGGCGCACTGGAAACCATGCTGGACAGAATTGCCACCTATAAGGAAAAAACAGAA
TCCTTAAAGGCAAAAATCAAAAAAGCAATGACCTACCCTATTGCGGTAATTGCAGTTGCACTTGTTGTAACTTCAATTCT
GCTAATCAAGGTAGTCCCTCAATTTGCCACCACTTTCTCTAGTTTCGGAGCGGATCTACCCGCATTCACAAAACTGGTCG
TCAGCATGTCAGAATGGATGCAGGCAAACTGGTTTATAGCCCTTGTTATTACTATTGTCGGTATTGGCGGCACGATCGAA
GCCAAAAAGCGCAATAAAAAAGTGGCCGAGTTTTTTGACCGCCTTATTTTAAAACTGCCAATTATCGGCCAAATTACCTA
CAACTCTATCTCAGCACGATTCGCCCGTACCCTTTCGACAACCTTTGCCGCCGGGGTTCCCCTGATCGACGCACTTAAGT
CTGTTGCAGGAGCAACCGGAAATAGTATCTATACCGAGGCAACCCTTAAAATAAGAGATTCCGTCGCAACGGGTATCCCC
CTCAATACCGCGCTGCGAACATCGGGGGTTTTTCCCACCATGCTGATACAAATGACAGCCATCGGTGAAGAGTCTGGTGC
CCTGGATGAAATGCTGGGTAAGTCAGCCGACTACTACGAAGAGGCTGTAGACAATATGGTCGACAACCTTACTACTCTGC
TTGAGCCGCTAATTATGGCAGTGCTGGGTATTCTGGTCGGCGGCTTGATGATCGCCATGTACCTGCCTATTTTCCAGCTG
GGTCAAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.141

98.02

0.629
  pilC Acinetobacter baylyi ADP1

61.965

98.267

0.609
  pilC Acinetobacter baumannii D1279779

61.965

98.267

0.609
  pilC Legionella pneumophila strain ERS1305867

56.079

99.752

0.559
  pilG Neisseria gonorrhoeae MS11

42.317

98.267

0.416
  pilG Neisseria meningitidis 44/76-A

42.065

98.267

0.413
  pilC Vibrio campbellii strain DS40M4

41.457

98.515

0.408
  pilC Vibrio cholerae strain A1552

41.414

98.02

0.406
  pilC Thermus thermophilus HB27

34.928

100

0.361

Multiple sequence alignment