Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHZDB_RS07625 Genome accession   NZ_CP172405
Coordinates   1721123..1722346 (+) Length   407 a.a.
NCBI ID   WP_079400987.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1716123..1727346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS07605 (ACHZDB_07605) ampD 1717157..1717708 (-) 552 WP_050912909.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACHZDB_RS07610 (ACHZDB_07610) nadC 1717801..1718688 (+) 888 WP_399425123.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACHZDB_RS07615 (ACHZDB_07615) pilA 1718954..1719403 (+) 450 WP_399425124.1 pilin Machinery gene
  ACHZDB_RS07620 (ACHZDB_07620) pilB 1719403..1721088 (+) 1686 WP_399425125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHZDB_RS07625 (ACHZDB_07625) pilC 1721123..1722346 (+) 1224 WP_079400987.1 type II secretion system F family protein Machinery gene
  ACHZDB_RS07630 (ACHZDB_07630) pilD 1722419..1723288 (+) 870 WP_012128879.1 A24 family peptidase Machinery gene
  ACHZDB_RS07635 (ACHZDB_07635) coaE 1723289..1723903 (+) 615 WP_399425126.1 dephospho-CoA kinase -
  ACHZDB_RS07640 (ACHZDB_07640) zapD 1723931..1724671 (+) 741 WP_012128881.1 cell division protein ZapD -
  ACHZDB_RS07645 (ACHZDB_07645) yacG 1724734..1724928 (+) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  ACHZDB_RS07650 (ACHZDB_07650) rplS 1725416..1725769 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACHZDB_RS07655 (ACHZDB_07655) trmD 1725811..1726554 (-) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACHZDB_RS07660 (ACHZDB_07660) rimM 1726582..1727130 (-) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44977.25 Da        Isoelectric Point: 10.3971

>NTDB_id=1067433 ACHZDB_RS07625 WP_079400987.1 1721123..1722346(+) (pilC) [Vibrio campbellii strain LB503]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKINHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVGLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1067433 ACHZDB_RS07625 WP_079400987.1 1721123..1722346(+) (pilC) [Vibrio campbellii strain LB503]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCATTTATCACCAAGATCAATCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACCATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACAAGAGCGGTGGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGCTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGGGCCTGCTCATTTCCGGC
AAAATTATGTCGCAACGCTCCGACTCATTTCGCCTTTTAGCCGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.263

100

0.993
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.297

0.4
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Legionella pneumophila strain ERS1305867

39.901

99.754

0.398
  pilG Neisseria gonorrhoeae MS11

39.012

99.509

0.388
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment