Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACHZDB_RS07615 | Genome accession | NZ_CP172405 |
| Coordinates | 1718954..1719403 (+) | Length | 149 a.a. |
| NCBI ID | WP_399425124.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LB503 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1713954..1724403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHZDB_RS07600 (ACHZDB_07600) | pdhR | 1715985..1716752 (-) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACHZDB_RS07605 (ACHZDB_07605) | ampD | 1717157..1717708 (-) | 552 | WP_050912909.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACHZDB_RS07610 (ACHZDB_07610) | nadC | 1717801..1718688 (+) | 888 | WP_399425123.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACHZDB_RS07615 (ACHZDB_07615) | pilA | 1718954..1719403 (+) | 450 | WP_399425124.1 | pilin | Machinery gene |
| ACHZDB_RS07620 (ACHZDB_07620) | pilB | 1719403..1721088 (+) | 1686 | WP_399425125.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACHZDB_RS07625 (ACHZDB_07625) | pilC | 1721123..1722346 (+) | 1224 | WP_079400987.1 | type II secretion system F family protein | Machinery gene |
| ACHZDB_RS07630 (ACHZDB_07630) | pilD | 1722419..1723288 (+) | 870 | WP_012128879.1 | A24 family peptidase | Machinery gene |
| ACHZDB_RS07635 (ACHZDB_07635) | coaE | 1723289..1723903 (+) | 615 | WP_399425126.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15448.83 Da Isoelectric Point: 9.0231
>NTDB_id=1067431 ACHZDB_RS07615 WP_399425124.1 1718954..1719403(+) (pilA) [Vibrio campbellii strain LB503]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKAEVAAALASMAGVKTNVEAYTVEYGVFPAASQSSALGVP
SNIPQGTMAFSQGTSAAGDIIFTFAGSDVSSLLINKKFALKRDVNGGWDCTASGASPAVTSDLLPKNCQ
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKAEVAAALASMAGVKTNVEAYTVEYGVFPAASQSSALGVP
SNIPQGTMAFSQGTSAAGDIIFTFAGSDVSSLLINKKFALKRDVNGGWDCTASGASPAVTSDLLPKNCQ
Nucleotide
Download Length: 450 bp
>NTDB_id=1067431 ACHZDB_RS07615 WP_399425124.1 1718954..1719403(+) (pilA) [Vibrio campbellii strain LB503]
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCTGTGATTGGTGTGTT
GGCGGCGATTGCAATTCCTCAATATCAAAAATACGTAGCGAAAGCCGAGGTCGCGGCAGCGCTAGCCTCTATGGCAGGAG
TTAAAACAAACGTTGAAGCTTATACTGTGGAATATGGCGTATTTCCTGCAGCATCACAATCATCAGCTCTCGGGGTTCCG
AGTAACATTCCTCAAGGAACCATGGCATTCTCACAAGGAACTTCTGCTGCCGGCGATATCATATTTACTTTTGCAGGTAG
CGATGTTAGCTCTCTCTTAATCAATAAAAAGTTCGCCCTAAAAAGGGATGTTAATGGTGGGTGGGACTGTACTGCTTCAG
GAGCAAGCCCTGCTGTAACTTCTGACTTATTGCCTAAAAACTGTCAATAG
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCTGTGATTGGTGTGTT
GGCGGCGATTGCAATTCCTCAATATCAAAAATACGTAGCGAAAGCCGAGGTCGCGGCAGCGCTAGCCTCTATGGCAGGAG
TTAAAACAAACGTTGAAGCTTATACTGTGGAATATGGCGTATTTCCTGCAGCATCACAATCATCAGCTCTCGGGGTTCCG
AGTAACATTCCTCAAGGAACCATGGCATTCTCACAAGGAACTTCTGCTGCCGGCGATATCATATTTACTTTTGCAGGTAG
CGATGTTAGCTCTCTCTTAATCAATAAAAAGTTCGCCCTAAAAAGGGATGTTAATGGTGGGTGGGACTGTACTGCTTCAG
GAGCAAGCCCTGCTGTAACTTCTGACTTATTGCCTAAAAACTGTCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
47.097 |
100 |
0.49 |
| pilA | Vibrio cholerae C6706 |
47.097 |
100 |
0.49 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.097 |
100 |
0.49 |
| pilA | Pseudomonas aeruginosa PAK |
40.789 |
100 |
0.416 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.361 |
96.644 |
0.409 |
| pilA | Acinetobacter baumannii strain A118 |
38.462 |
95.973 |
0.369 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.184 |
100 |
0.369 |