Detailed information NTG1067434

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACHZDB_RS07630
• Genome accession: NZ_CP172405
• Coordinates: 1722419..1723288 (+)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB503
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1717419..1728288

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHZDB_RS07610 (ACHZDB_07610)	nadC	1717801..1718688 (+)	888	WP_399425123.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACHZDB_RS07615 (ACHZDB_07615)	pilA	1718954..1719403 (+)	450	WP_399425124.1	pilin	Machinery gene
ACHZDB_RS07620 (ACHZDB_07620)	pilB	1719403..1721088 (+)	1686	WP_399425125.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACHZDB_RS07625 (ACHZDB_07625)	pilC	1721123..1722346 (+)	1224	WP_079400987.1	type II secretion system F family protein	Machinery gene
ACHZDB_RS07630 (ACHZDB_07630)	pilD	1722419..1723288 (+)	870	WP_012128879.1	A24 family peptidase	Machinery gene
ACHZDB_RS07635 (ACHZDB_07635)	coaE	1723289..1723903 (+)	615	WP_399425126.1	dephospho-CoA kinase	-
ACHZDB_RS07640 (ACHZDB_07640)	zapD	1723931..1724671 (+)	741	WP_012128881.1	cell division protein ZapD	-
ACHZDB_RS07645 (ACHZDB_07645)	yacG	1724734..1724928 (+)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
ACHZDB_RS07650 (ACHZDB_07650)	rplS	1725416..1725769 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACHZDB_RS07655 (ACHZDB_07655)	trmD	1725811..1726554 (-)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACHZDB_RS07660 (ACHZDB_07660)	rimM	1726582..1727130 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
ACHZDB_RS07665 (ACHZDB_07665)	rpsP	1727158..1727406 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=1067434 ACHZDB_RS07630 WP_012128879.1 1722419..1723288(+) (pilD) [Vibrio campbellii strain LB503]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1067434 ACHZDB_RS07630 WP_012128879.1 1722419..1723288(+) (pilD) [Vibrio campbellii strain LB503]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCTGCATTGGGTGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439