Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAM57_RS05870 Genome accession   NZ_AP028659
Coordinates   1203743..1204972 (-) Length   409 a.a.
NCBI ID   WP_369661000.1    Uniprot ID   -
Organism   Variovorax sp. V15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198743..1209972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM57_RS05845 (GmRootV15_11440) zapD 1198771..1199526 (-) 756 WP_126024674.1 cell division protein ZapD -
  ACAM57_RS05850 (GmRootV15_11450) - 1199557..1200591 (-) 1035 WP_369660998.1 hypothetical protein -
  ACAM57_RS05855 (GmRootV15_11460) - 1200596..1202089 (-) 1494 WP_126024676.1 MBOAT family protein -
  ACAM57_RS05860 (GmRootV15_11470) coaE 1202159..1202770 (-) 612 WP_369660999.1 dephospho-CoA kinase -
  ACAM57_RS05865 (GmRootV15_11480) - 1202778..1203743 (-) 966 WP_184642162.1 A24 family peptidase -
  ACAM57_RS05870 (GmRootV15_11490) pilC 1203743..1204972 (-) 1230 WP_369661000.1 type II secretion system F family protein Machinery gene
  ACAM57_RS05875 (GmRootV15_11500) pilB 1204999..1206732 (-) 1734 WP_126024679.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM57_RS05885 (GmRootV15_11510) - 1206977..1207969 (-) 993 WP_126024680.1 polyprenyl synthetase family protein -
  ACAM57_RS05890 (GmRootV15_11520) rplU 1208166..1208477 (+) 312 WP_019656543.1 50S ribosomal protein L21 -
  ACAM57_RS05895 (GmRootV15_11530) rpmA 1208499..1208759 (+) 261 WP_093057448.1 50S ribosomal protein L27 -
  ACAM57_RS05900 (GmRootV15_11540) cgtA 1208831..1209907 (+) 1077 WP_126024681.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44697.41 Da        Isoelectric Point: 9.5420

>NTDB_id=106721 ACAM57_RS05870 WP_369661000.1 1203743..1204972(-) (pilC) [Variovorax sp. V15]
MATVASSRTQPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKAIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPISVIVVAFIVIAIIMIFVIPAFKEVFTSFGADLPAPTLIVIGISEFFVSYWWLIFGGIGGGL
YFFIQAWKRNERVQRTMDRLLLRIPVFGVLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=106721 ACAM57_RS05870 WP_369661000.1 1203743..1204972(-) (pilC) [Variovorax sp. V15]
ATGGCTACAGTGGCATCCTCCCGCACCCAGCCCACACACAAGGAATTTGTCTTCGAATGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTACGCGGCGAACTTCGTGCTGCCGGCGAAAACCAGGTGCAGGCCGCGCTGCGCCGCCAGGGCGTGCTCGCCT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGGCGATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGCTGGCG
ACCATGATGAAGGCCGGCGTGCCGCTGATGCAGTCCTTCGATATCGTCGGGCGCGGCAATGCGAATGCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAAACCGGCACCTCGCTGTCGGCCGCATTCCGCAAGTTCCCGAAGTACTTCG
ACAACCTCTACTGCAACCTGGTGGAGGCTGGCGAAGCGGCCGGTATTCTGGAAGAACTGCTGGACCGGCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCATCTCGGTGATCGTGGTGGCATTCAT
CGTGATCGCCATCATCATGATCTTCGTGATTCCTGCGTTCAAGGAGGTGTTCACGTCTTTTGGCGCCGACCTGCCTGCAC
CAACGCTGATCGTGATTGGTATCAGCGAATTCTTCGTTTCGTACTGGTGGCTTATTTTCGGCGGCATCGGCGGGGGACTC
TATTTCTTCATCCAGGCCTGGAAACGCAACGAGCGAGTGCAAAGAACGATGGACCGTCTTCTGCTGCGGATCCCGGTCTT
CGGCGTCCTCATCGAAAAATCCTGCGTCGCCCGCTGGACCCGCACCCTGGCCACCATGTTCGCCGCCGGCGTCCCGCTGG
TCGAAGCCCTCGACTCCGTGGGCGGCGCCTCCGGCAACACCGTCTACGGCGACGCCACCGCGAAGATCCAGCAGGAAGTC
TCCACCGGCACCAGCCTCACGGCCGCCATGACCAACGTCAACCTGTTCCCGTCCATGGTGATCCAGATGACCGCCATCGG
CGAGGAATCCGGCTCCATCGACCACATGCTGGGCAAGGCCGCAGACTTCTACGAATCCGAGGTGGACGACATGGTCGCGG
GCCTCTCCAGCCTGATGGAGCCGATCATCATCGTGTTCCTCGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.342

98.533

0.535
  pilG Neisseria gonorrhoeae MS11

51.889

97.066

0.504
  pilG Neisseria meningitidis 44/76-A

51.637

97.066

0.501
  pilC Acinetobacter baylyi ADP1

51.005

97.311

0.496
  pilC Legionella pneumophila strain ERS1305867

50.505

96.822

0.489
  pilC Acinetobacter baumannii D1279779

47.932

100

0.482
  pilC Vibrio cholerae strain A1552

40.955

97.311

0.399
  pilC Thermus thermophilus HB27

37.47

100

0.384
  pilC Vibrio campbellii strain DS40M4

38.462

98.533

0.379

Multiple sequence alignment