Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACH3PB_RS01715 Genome accession   NZ_CP172312
Coordinates   365658..366878 (-) Length   406 a.a.
NCBI ID   WP_416397750.1    Uniprot ID   -
Organism   Allohahella sp. A8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360658..371878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH3PB_RS01680 (ACH3PB_01680) - 361074..361565 (+) 492 WP_416397743.1 PilZ domain-containing protein -
  ACH3PB_RS01685 (ACH3PB_01685) tsaA 361556..362287 (-) 732 WP_416397744.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACH3PB_RS01690 (ACH3PB_01690) - 362290..363402 (-) 1113 WP_416397745.1 hypothetical protein -
  ACH3PB_RS01695 (ACH3PB_01695) - 363377..363838 (-) 462 WP_416397746.1 HIT family protein -
  ACH3PB_RS01700 (ACH3PB_01700) yacG 363835..364080 (-) 246 WP_416397747.1 DNA gyrase inhibitor YacG -
  ACH3PB_RS01705 (ACH3PB_01705) coaE 364077..364667 (-) 591 WP_416397748.1 dephospho-CoA kinase -
  ACH3PB_RS01710 (ACH3PB_01710) pilD 364698..365654 (-) 957 WP_416397749.1 prepilin peptidase Machinery gene
  ACH3PB_RS01715 (ACH3PB_01715) pilC 365658..366878 (-) 1221 WP_416397750.1 type II secretion system F family protein Machinery gene
  ACH3PB_RS01720 (ACH3PB_01720) pilB 366942..368642 (-) 1701 WP_416397751.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACH3PB_RS01725 (ACH3PB_01725) - 369063..369518 (+) 456 WP_416397752.1 pilin -
  ACH3PB_RS01730 (ACH3PB_01730) - 370057..371517 (+) 1461 WP_416397753.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44449.42 Da        Isoelectric Point: 9.4356

>NTDB_id=1066242 ACH3PB_RS01715 WP_416397750.1 365658..366878(-) (pilC) [Allohahella sp. A8]
MAQAIEKTVPFLWEGRDRKGNKTKGETVGTNSAIVKAHLRKQGIVPTKVRKKPKSIFGEKTQKISPFDIAIFVRQMATMM
KAGVPLVQSFDIVADGLENPSLRKLVLDVKNDVAAGNSFASSLMKHPKYFDDLFCNLVESGEKAGALETMLGRVATYMEK
TEALKKKIKKAMTYPIAVLVVALVVTGILLVYVVPMFEEMFQSFGADLPAFTRMVVDLSRWAQATWYYIIVAIIAIIFVF
KEIMRRSEAARNQMDRLVLKLPVVGDILYKSAVARFGRVLSTTFAAGVPLVDALDSVAGASGNVVFKNAVLKIKEDVSAG
TQLQYSMKESGVFPVMAVQLTSIGEESGALDAMLEKVADHYESEVDDAVDNLTALMEPMIMSVLGVLIGGLITAMYLPIF
QMGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1066242 ACH3PB_RS01715 WP_416397750.1 365658..366878(-) (pilC) [Allohahella sp. A8]
ATGGCGCAGGCAATTGAAAAAACAGTCCCCTTCCTCTGGGAAGGCAGGGACAGGAAAGGTAACAAGACCAAGGGCGAGAC
TGTTGGCACCAATAGCGCCATTGTCAAAGCTCACCTCCGCAAACAAGGGATAGTTCCTACGAAAGTACGGAAAAAGCCCA
AGAGCATATTCGGAGAAAAAACGCAGAAAATTTCGCCGTTCGATATTGCGATCTTCGTGCGTCAAATGGCAACAATGATG
AAAGCGGGCGTCCCACTGGTGCAATCTTTCGATATTGTTGCGGATGGTCTTGAAAACCCGTCACTGCGCAAACTTGTTCT
CGATGTGAAAAATGACGTCGCAGCGGGTAACAGTTTTGCGTCTTCGTTGATGAAGCACCCAAAGTATTTCGATGACCTGT
TCTGCAATCTGGTCGAAAGTGGCGAGAAAGCCGGTGCGCTTGAGACGATGCTGGGCCGTGTCGCGACCTACATGGAAAAA
ACCGAGGCGCTGAAGAAGAAGATCAAGAAAGCAATGACCTACCCCATTGCCGTTCTGGTAGTTGCGCTAGTCGTTACGGG
TATTCTCCTTGTCTACGTCGTGCCAATGTTTGAAGAAATGTTTCAGAGTTTCGGGGCTGACCTTCCCGCATTTACTCGCA
TGGTTGTCGATCTGTCGAGATGGGCGCAGGCAACTTGGTACTACATAATCGTGGCAATAATCGCGATCATCTTCGTGTTC
AAAGAGATAATGCGGCGATCTGAGGCGGCTAGAAATCAAATGGACCGCTTGGTCCTCAAGCTGCCTGTAGTCGGCGACAT
TCTCTACAAGTCAGCCGTAGCCCGCTTCGGACGTGTACTCTCTACCACGTTTGCTGCCGGTGTTCCATTAGTCGACGCGC
TGGACTCAGTAGCGGGCGCCTCCGGCAACGTGGTCTTCAAGAACGCGGTTTTGAAGATAAAGGAAGATGTTTCTGCAGGT
ACTCAATTGCAGTACAGCATGAAGGAAAGCGGTGTGTTCCCCGTCATGGCGGTCCAGCTGACATCTATCGGCGAAGAATC
CGGCGCCCTAGACGCCATGCTCGAGAAAGTCGCGGATCACTACGAATCAGAAGTCGATGATGCCGTCGACAACCTGACCG
CCCTGATGGAGCCTATGATAATGTCCGTACTCGGCGTACTGATCGGTGGTCTGATCACTGCCATGTACCTCCCAATATTC
CAAATGGGCCAGGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.488

100

0.675
  pilC Acinetobacter baylyi ADP1

61.461

97.783

0.601
  pilC Acinetobacter baumannii D1279779

60.202

97.783

0.589
  pilC Legionella pneumophila strain ERS1305867

54.293

97.537

0.53
  pilG Neisseria meningitidis 44/76-A

41.791

99.015

0.414
  pilG Neisseria gonorrhoeae MS11

42.065

97.783

0.411
  pilC Vibrio cholerae strain A1552

39.95

99.261

0.397
  pilC Vibrio campbellii strain DS40M4

38.889

97.537

0.379

Multiple sequence alignment