Detailed information NTG1066241

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACH3PB_RS01710
• Genome accession: NZ_CP172312
• Coordinates: 364698..365654 (-)
• Length: 318 a.a.
• NCBI ID: WP_416397749.1
• Uniprot ID: -
• Organism: Allohahella sp. A8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 359698..370654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH3PB_RS01680 (ACH3PB_01680)	-	361074..361565 (+)	492	WP_416397743.1	PilZ domain-containing protein	-
ACH3PB_RS01685 (ACH3PB_01685)	tsaA	361556..362287 (-)	732	WP_416397744.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
ACH3PB_RS01690 (ACH3PB_01690)	-	362290..363402 (-)	1113	WP_416397745.1	hypothetical protein	-
ACH3PB_RS01695 (ACH3PB_01695)	-	363377..363838 (-)	462	WP_416397746.1	HIT family protein	-
ACH3PB_RS01700 (ACH3PB_01700)	yacG	363835..364080 (-)	246	WP_416397747.1	DNA gyrase inhibitor YacG	-
ACH3PB_RS01705 (ACH3PB_01705)	coaE	364077..364667 (-)	591	WP_416397748.1	dephospho-CoA kinase	-
ACH3PB_RS01710 (ACH3PB_01710)	pilD	364698..365654 (-)	957	WP_416397749.1	prepilin peptidase	Machinery gene
ACH3PB_RS01715 (ACH3PB_01715)	pilC	365658..366878 (-)	1221	WP_416397750.1	type II secretion system F family protein	Machinery gene
ACH3PB_RS01720 (ACH3PB_01720)	pilB	366942..368642 (-)	1701	WP_416397751.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACH3PB_RS01725 (ACH3PB_01725)	-	369063..369518 (+)	456	WP_416397752.1	pilin	-

Sequence

Protein

• Length: 318 a.a.
• Molecular weight: 34711.89 Da
• Isoelectric Point: 6.8196

>NTDB_id=1066241 ACH3PB_RS01710 WP_416397749.1 364698..365654(-) (pilD) [Allohahella sp. A8]
MTEFFQYLQQHPNAAFFFIAVFGLLIGSFLNVVIYRLPRMMEAGWLQQCEQFLADHQQRKAEAAAGPTNHNTVAPDLTHE
ADAPAEQAETTPVMTLSKPDSTCPHCGHKIRAWENIPVLSYLALRGRCSSCKATISLRYPVIELVTALLGVICLKFIGVN
MAGLAAVALSWTLLTLSMIDFDTKLLPDSITMPLLWAGLIANSFGLFTDLESAIWGAIGGYMSLWLVFHGFRLLTGKEGM
GYGDFKLLAALGAWLGWQVLPLIILLSSLVGAIIGIGLIVIRGRDRNIPIPFGPYLAIAGFIALLWGNAIISSYLSTL

Nucleotide

• Length: 957 bp

>NTDB_id=1066241 ACH3PB_RS01710 WP_416397749.1 364698..365654(-) (pilD) [Allohahella sp. A8]
GTGACAGAGTTCTTCCAATACCTACAGCAGCATCCCAATGCTGCTTTTTTTTTCATCGCTGTGTTCGGCCTACTAATCGG
CAGCTTCCTGAACGTGGTGATCTACCGCCTTCCTCGCATGATGGAAGCCGGCTGGCTCCAGCAGTGCGAACAGTTCCTGG
CAGATCACCAGCAGCGGAAGGCTGAGGCAGCCGCTGGCCCCACAAACCACAACACCGTCGCCCCAGACCTCACCCACGAA
GCCGACGCACCCGCCGAACAGGCGGAAACCACGCCGGTGATGACCCTCTCCAAGCCAGACTCGACCTGCCCGCACTGCGG
CCACAAGATCCGCGCCTGGGAGAACATTCCCGTACTCAGCTACCTCGCCCTGCGAGGCCGCTGCTCGTCGTGCAAGGCCA
CCATCAGCCTGCGCTACCCTGTTATCGAGCTCGTCACCGCCCTACTCGGCGTTATCTGCCTCAAGTTCATCGGTGTCAAC
ATGGCCGGTCTGGCCGCCGTTGCCCTCAGCTGGACACTGCTCACCCTGTCGATGATCGACTTCGATACCAAGCTCCTGCC
AGACAGCATCACCATGCCGCTACTCTGGGCAGGGCTTATCGCCAACAGCTTCGGGCTTTTCACGGACCTTGAGTCTGCGA
TATGGGGTGCCATTGGCGGCTACATGAGCCTCTGGCTGGTCTTCCACGGCTTTCGCCTGCTCACAGGCAAGGAAGGCATG
GGCTATGGCGACTTCAAGCTCCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAGGTGCTGCCGCTCATCATCCTGCTGTC
TTCCTTAGTCGGCGCAATTATCGGTATTGGCCTCATCGTGATCCGCGGACGAGACAGAAATATTCCGATTCCCTTTGGTC
CCTATCTTGCCATCGCAGGCTTCATCGCTTTACTCTGGGGCAATGCGATTATTTCCTCATATCTCTCGACGCTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-154)

• Type IV leader peptidase family (Peptidase_A24) (168-276)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.125	100	0.484
pilD	Acinetobacter nosocomialis M2	47.302	99.057	0.469
pilD	Acinetobacter baumannii D1279779	46.984	99.057	0.465
pilD	Vibrio campbellii strain DS40M4	44.654	100	0.447
pilD	Neisseria gonorrhoeae MS11	46.479	89.308	0.415