Detailed information NTG1065960

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ACG4EF_RS01970
• Genome accession: NZ_CP172259
• Coordinates: 423643..424074 (+)
• Length: 143 a.a.
• NCBI ID: WP_285089319.1
• Uniprot ID: -
• Organism: Pediococcus acidilactici strain XJ-24
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 418643..429074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG4EF_RS01930 (ACG4EF_01930)	-	418896..419363 (+)	468	WP_397321220.1	helix-turn-helix domain-containing protein	-
ACG4EF_RS01935 (ACG4EF_01935)	-	419345..419617 (+)	273	WP_397321221.1	hypothetical protein	-
ACG4EF_RS01940 (ACG4EF_01940)	-	419628..419771 (+)	144	WP_397321222.1	hypothetical protein	-
ACG4EF_RS01945 (ACG4EF_01945)	-	419958..420851 (+)	894	WP_397321223.1	DUF1351 domain-containing protein	-
ACG4EF_RS01950 (ACG4EF_01950)	-	420851..421690 (+)	840	WP_397321224.1	ERF family protein	-
ACG4EF_RS01955 (ACG4EF_01955)	-	421683..422561 (+)	879	WP_214085006.1	helix-turn-helix domain-containing protein	-
ACG4EF_RS01960 (ACG4EF_01960)	-	422566..423288 (+)	723	WP_397321225.1	putative HNHc nuclease	-
ACG4EF_RS01965 (ACG4EF_01965)	-	423233..423640 (+)	408	WP_285089321.1	hypothetical protein	-
ACG4EF_RS01970 (ACG4EF_01970)	ssb	423643..424074 (+)	432	WP_285089319.1	single-stranded DNA-binding protein	Machinery gene
ACG4EF_RS01975 (ACG4EF_01975)	-	424245..424409 (-)	165	WP_397321226.1	YjzC family protein	-
ACG4EF_RS01980 (ACG4EF_01980)	-	424544..424780 (+)	237	WP_159219280.1	helix-turn-helix transcriptional regulator	-
ACG4EF_RS01985 (ACG4EF_01985)	-	424855..425040 (+)	186	WP_397321227.1	hypothetical protein	-
ACG4EF_RS01990 (ACG4EF_01990)	-	425388..425810 (+)	423	WP_397321228.1	ArpU family phage packaging/lysis transcriptional regulator	-
ACG4EF_RS02005 (ACG4EF_02005)	-	426418..426594 (+)	177	WP_200834126.1	hypothetical protein	-
ACG4EF_RS02010 (ACG4EF_02010)	-	426594..427280 (+)	687	WP_397321339.1	terminase	-
ACG4EF_RS02015 (ACG4EF_02015)	-	427264..428577 (+)	1314	WP_397321229.1	PBSX family phage terminase large subunit	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 16114.75 Da
• Isoelectric Point: 4.8890

>NTDB_id=1065960 ACG4EF_RS01970 WP_285089319.1 423643..424074(+) (ssb) [Pediococcus acidilactici strain XJ-24]
MINRTVLVGRLTKDPEIRYTQSGMAVANFTMAVNRQFTNANGEREADFISCIVWRKAAENFCNYTHKGSLVGIDGRIQTS
TYEKEGQRVYSTQVVVDSFSLLEPKQQSQQRGQQSNASDALHDNFGQPANNNDFDIDDNDLPF

Nucleotide

• Length: 432 bp

>NTDB_id=1065960 ACG4EF_RS01970 WP_285089319.1 423643..424074(+) (ssb) [Pediococcus acidilactici strain XJ-24]
ATGATTAATCGAACCGTATTAGTCGGTCGCCTAACCAAGGATCCAGAAATCCGTTATACCCAATCAGGGATGGCGGTGGC
CAACTTTACTATGGCCGTGAACCGGCAGTTCACCAACGCTAATGGCGAGCGAGAAGCCGACTTTATCAGCTGTATTGTCT
GGAGAAAGGCAGCCGAAAACTTCTGTAATTACACGCATAAAGGATCATTGGTCGGGATTGACGGTCGGATCCAAACGAGT
ACGTACGAGAAGGAAGGCCAGCGTGTTTACTCAACACAAGTGGTCGTAGATAGCTTCTCATTGTTAGAACCGAAACAGCA
GAGCCAACAACGTGGCCAGCAATCTAACGCTAGCGATGCTTTGCATGACAATTTTGGACAGCCTGCTAACAATAACGATT
TTGATATCGATGACAACGATCTGCCATTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	53.529	100	0.636
ssbA	Bacillus subtilis subsp. subtilis str. 168	46.893	100	0.58
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.455	76.923	0.427
ssbB	Streptococcus sobrinus strain NIDR 6715-7	41.958	100	0.42
ssbB/cilA	Streptococcus mitis NCTC 12261	39.86	100	0.399
ssbB/cilA	Streptococcus pneumoniae TIGR4	39.86	100	0.399
ssbB/cilA	Streptococcus pneumoniae Rx1	39.161	100	0.392
ssbB/cilA	Streptococcus pneumoniae D39	39.161	100	0.392
ssbB/cilA	Streptococcus pneumoniae R6	39.161	100	0.392
ssbB/cilA	Streptococcus mitis SK321	39.161	100	0.392