Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACHZK0_RS18245 Genome accession   NZ_CP172246
Coordinates   3577856..3579094 (-) Length   412 a.a.
NCBI ID   WP_262740365.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3572856..3584094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS18220 (ACHZK0_18220) spoVS 3572947..3573207 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  ACHZK0_RS18225 (ACHZK0_18225) - 3573357..3574151 (-) 795 WP_001221093.1 TIGR00282 family metallophosphoesterase -
  ACHZK0_RS18230 (ACHZK0_18230) rny 3574306..3575871 (-) 1566 WP_016086643.1 ribonuclease Y -
  ACHZK0_RS18235 (ACHZK0_18235) - 3576353..3576775 (-) 423 Protein_3527 recombinase RecA -
  ACHZK0_RS18240 (ACHZK0_18240) recA 3577103..3577711 (-) 609 Protein_3528 recombinase RecA -
  ACHZK0_RS18245 (ACHZK0_18245) cinA 3577856..3579094 (-) 1239 WP_262740365.1 competence/damage-inducible protein CinA Machinery gene
  ACHZK0_RS18250 (ACHZK0_18250) pgsA 3579115..3579693 (-) 579 WP_001052972.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACHZK0_RS18255 (ACHZK0_18255) - 3579757..3580668 (-) 912 WP_242250707.1 helix-turn-helix domain-containing protein -
  ACHZK0_RS18260 (ACHZK0_18260) - 3580690..3581475 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  ACHZK0_RS18265 (ACHZK0_18265) - 3581615..3581863 (-) 249 WP_000114455.1 DUF3243 domain-containing protein -
  ACHZK0_RS18270 (ACHZK0_18270) ymfI 3581939..3582652 (-) 714 WP_395760792.1 elongation factor P 5-aminopentanone reductase -
  ACHZK0_RS18275 (ACHZK0_18275) yfmH 3582756..3584042 (-) 1287 WP_262740367.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45096.44 Da        Isoelectric Point: 5.4784

>NTDB_id=1065903 ACHZK0_RS18245 WP_262740365.1 3577856..3579094(-) (cinA) [Bacillus sp. 3G2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLKQAIEVAEERADILIFTGGLGPTKDDLTKET
ISTSLGGELVYDEQALASISEYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAAKLIQHMED
LILERVGEFFYGYDQEFLHEKAIGLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEGV
LSIDGAVSKECARYLAENVKGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=1065903 ACHZK0_RS18245 WP_262740365.1 3577856..3579094(-) (cinA) [Bacillus sp. 3G2]
ATGAATGCTGAAATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAGCGATTAAAGCAGGCGATTG
AAGTTGCGGAAGAACGTGCTGACATACTTATTTTCACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTACTAGTTTGGGTGGAGAGCTAGTGTATGATGAACAGGCATTAGCATCGATAAGCGAGTACTTTAAGCGTACAGG
TCGCGAGTTCACAGAGAATAATAAAAAGCAGGCGCTCGTTTTAGATGGAGCAACTGTATTTGCGAATGATCACGGCATGG
CACCTGGTATGGGGTTAAATAAGAACGGGAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCGATGTAT
ATCAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCCCTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCGGCGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGATCAAGAGTTTCTGCATGAAAAGGCGATAGGGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACCGGTGGACTCTTCGGGAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGGAGTG
TTATCTATTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAACGTTAAGGGTTTATTAAAAGCAGATAT
CGGCATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACAGTTTTCGTTGGATTGGCGA
TGAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATCAGGGAACGTTCGGCGAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.495

100

0.585
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.953

91.99

0.386

Multiple sequence alignment