Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHMXE_RS17400 Genome accession   NZ_CP172004
Coordinates   1079244..1080479 (-) Length   411 a.a.
NCBI ID   WP_209541757.1    Uniprot ID   -
Organism   Variovorax sp. UC122_21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074244..1085479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXE_RS17375 (ACHMXE_17390) zapD 1074284..1075039 (-) 756 WP_209541761.1 cell division protein ZapD -
  ACHMXE_RS17380 (ACHMXE_17395) - 1075074..1076087 (-) 1014 WP_203202661.1 hypothetical protein -
  ACHMXE_RS17385 (ACHMXE_17400) - 1076089..1077579 (-) 1491 WP_209541760.1 MBOAT family protein -
  ACHMXE_RS17390 (ACHMXE_17405) coaE 1077654..1078262 (-) 609 WP_209541759.1 dephospho-CoA kinase -
  ACHMXE_RS17395 (ACHMXE_17410) - 1078279..1079244 (-) 966 WP_395350359.1 prepilin peptidase -
  ACHMXE_RS17400 (ACHMXE_17415) pilC 1079244..1080479 (-) 1236 WP_209541757.1 type II secretion system F family protein Machinery gene
  ACHMXE_RS17405 (ACHMXE_17420) pilB 1080510..1082243 (-) 1734 WP_203202656.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHMXE_RS17415 (ACHMXE_17430) - 1082486..1083415 (-) 930 WP_395350360.1 polyprenyl synthetase family protein -
  ACHMXE_RS17420 (ACHMXE_17435) rplU 1083663..1083974 (+) 312 WP_057592097.1 50S ribosomal protein L21 -
  ACHMXE_RS17425 (ACHMXE_17440) rpmA 1083987..1084247 (+) 261 WP_057592096.1 50S ribosomal protein L27 -
  ACHMXE_RS17430 (ACHMXE_17445) cgtA 1084319..1085395 (+) 1077 WP_395350361.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45080.78 Da        Isoelectric Point: 9.7956

>NTDB_id=1064772 ACHMXE_RS17400 WP_209541757.1 1079244..1080479(-) (pilC) [Variovorax sp. UC122_21]
MATAASTANRQRRDVKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRTRSGKSIKPKDIAIFTRQ
LATMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLA
TYMEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAVSEFFVAYWWLIFGVIGG
GLYFFFQAWKRNERVQRVMDRLLLRIPIFGALIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQ
EVSTGTSLTNAMMNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1064772 ACHMXE_RS17400 WP_209541757.1 1079244..1080479(-) (pilC) [Variovorax sp. UC122_21]
ATGGCCACAGCAGCATCGACGGCAAACCGGCAACGGCGCGACGTCAAGGAATTCGTCTTCGAGTGGGAAGGCAAGGATCG
CAACGGCAAGCTGGTGCGCGGTGAGCTGCGTGCCGCCGGCGAGAACCAGGTGCAGGCCGCGTTGCGGCGCCAGGGCGTGC
TCGCCAGCAAGATCAAGAAGCGCCGCACGCGCTCGGGCAAGAGCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAG
CTCGCCACCATGATGAAGGCCGGCGTGCCGCTTCTGCAGTCCTTCGACATCGTGGGCCGCGGCAACGCCAACCCCAGCGT
CGCCAAGCTGCTCAACGACATCCGCAGCGACGTCGAGACCGGCACCTCGCTGTCGTCGGCCTTCCGCAAGTTCCCGAAGT
ACTTCGACAACCTCTACTGCAACCTGGTCGAGGCCGGCGAAGCGGCCGGTATCCTCGAAGAACTGCTCGACCGCCTGGCG
ACCTACATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTACCCGACCTCGGTGGTCGTGGTGGC
CTTCGTGGTGGTGGCGATCATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTGTTCACCTCCTTCGGCGCCGACCTGC
CTGCCCCCACGCTGTTCGTGATGGCGGTCAGCGAGTTCTTCGTGGCCTACTGGTGGCTGATCTTCGGCGTGATCGGTGGC
GGCCTCTACTTCTTCTTCCAGGCCTGGAAGCGCAACGAGCGCGTGCAGCGCGTCATGGACCGCCTGCTGCTGCGGATACC
GATCTTCGGCGCGCTGATCGAGAAGTCCTGCGTGGCGCGCTGGACGCGCACGCTGGCCACCATGTTCGCCGCGGGCGTGC
CGCTGGTCGAGGCGCTCGACTCGGTCGGTGGCGCCTCGGGCAACACCGTGTACGGCGACGCCACGGCCAAGATCCAGCAG
GAGGTGTCGACCGGCACCAGCCTCACGAACGCGATGATGAACGTCAACCTGTTCCCTTCGATGGTGATCCAGATGACCGC
GATCGGCGAGGAATCGGGCTCCATCGACCACATGCTCGGCAAGGCGGCCGACTTCTACGAGTCCGAGGTCGACGACATGG
TCGCCGGCCTCTCGAGCCTGATGGAGCCGATCATCATCGTCTTCCTCGGCGTGATCATCGGCGGCATCGTGGTCTCGATG
TACCTGCCCATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.094

98.054

0.53
  pilG Neisseria gonorrhoeae MS11

52.273

96.35

0.504
  pilC Acinetobacter baylyi ADP1

51.759

96.837

0.501
  pilG Neisseria meningitidis 44/76-A

52.02

96.35

0.501
  pilC Legionella pneumophila strain ERS1305867

49.749

96.837

0.482
  pilC Acinetobacter baumannii D1279779

49.874

96.594

0.482
  pilC Vibrio cholerae strain A1552

41.25

97.324

0.401
  pilC Thermus thermophilus HB27

38.995

100

0.397
  pilC Vibrio campbellii strain DS40M4

39.303

97.81

0.384

Multiple sequence alignment