Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACHMXC_RS03465 Genome accession   NZ_CP171997
Coordinates   769686..770906 (+) Length   406 a.a.
NCBI ID   WP_146869859.1    Uniprot ID   A0A561XRM2
Organism   Acidovorax delafieldii strain UC81_30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764686..775906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXC_RS03440 (ACHMXC_03440) rpmA 765925..766182 (-) 258 WP_005794180.1 50S ribosomal protein L27 -
  ACHMXC_RS03445 (ACHMXC_03445) rplU 766198..766509 (-) 312 WP_005794184.1 50S ribosomal protein L21 -
  ACHMXC_RS03450 (ACHMXC_03450) - 766745..767674 (+) 930 WP_395456231.1 polyprenyl synthetase family protein -
  ACHMXC_RS03460 (ACHMXC_03460) pilB 767926..769665 (+) 1740 WP_056060313.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACHMXC_RS03465 (ACHMXC_03465) pilC 769686..770906 (+) 1221 WP_146869859.1 type II secretion system F family protein Machinery gene
  ACHMXC_RS03470 (ACHMXC_03470) - 770906..771778 (+) 873 WP_395456234.1 prepilin peptidase -
  ACHMXC_RS03475 (ACHMXC_03475) coaE 771788..772408 (+) 621 WP_395456236.1 dephospho-CoA kinase -
  ACHMXC_RS03480 (ACHMXC_03480) zapD 772494..773249 (+) 756 WP_056060302.1 cell division protein ZapD -
  ACHMXC_RS03485 (ACHMXC_03485) - 773339..773557 (+) 219 WP_082522383.1 DNA gyrase inhibitor YacG -
  ACHMXC_RS03490 (ACHMXC_03490) - 773675..774133 (-) 459 WP_099732210.1 NUDIX domain-containing protein -
  ACHMXC_RS03495 (ACHMXC_03495) - 774123..774995 (-) 873 WP_395456239.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44628.56 Da        Isoelectric Point: 9.4085

>NTDB_id=1064748 ACHMXC_RS03465 WP_146869859.1 769686..770906(+) (pilC) [Acidovorax delafieldii strain UC81_30]
MATAASTKDIKDFVFEWEGKDRNGKIVRGEIRAVGENQVQATLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMM
KAGVPLLQSFDIVGRGNTNASVTKLLNDIRSDIETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEK
TEAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEVFVKWWWLIFGVLGGGFFFF
MQAWRRNEKMQMFMDRLLLRIPVFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYSLATDKIQQEVSTG
TSLTAAMGNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1064748 ACHMXC_RS03465 WP_146869859.1 769686..770906(+) (pilC) [Acidovorax delafieldii strain UC81_30]
ATGGCGACCGCAGCATCAACCAAAGATATCAAGGATTTTGTCTTCGAGTGGGAGGGCAAGGACCGCAACGGAAAGATCGT
TCGTGGCGAAATCCGCGCGGTAGGAGAAAACCAAGTGCAGGCGACTTTGCGTCGCCAAGGGGTTTTCCCCACCAAAATCA
AGAAGCGCCGCATGCGTTCGGGCAAAAAAATCAAGCCCAAGGACATTGCGCTGTTTACCCGCCAGCTGGCAACCATGATG
AAGGCTGGCGTACCTCTGCTGCAGTCCTTCGACATTGTGGGTCGAGGCAATACCAATGCCAGCGTCACCAAGCTGCTCAA
TGACATCCGGTCCGATATCGAGACAGGGACATCACTCAACGGGGCTTTCAGAAAGTACCCGATGTACTTTGACAGTCTCT
ACTGCAACTTGGTAGAGGCGGGCGAGGCTGCGGGTATTTTGGAAGCCCTGCTGGATCGGCTGGCTACGTACATGGAGAAA
ACCGAGGCGATCAAATCGAAGATCAAGTCGGCCCTGATGTACCCCATTTCCGTGGTGATTGTGGCTTTCGTGGTGGTGAC
GGTCATCATGATCTTCGTGATTCCAGCATTCAAGGAGGTTTTCACGTCTTTCGGAGCCGATCTCCCGGCCCCCACATTGT
TTGTAATGGCCATCAGCGAAGTATTTGTCAAATGGTGGTGGCTGATATTTGGCGTCCTCGGCGGAGGCTTTTTCTTTTTC
ATGCAGGCATGGCGCCGCAATGAAAAGATGCAGATGTTCATGGACCGGCTTCTCTTGCGGATTCCGGTGTTTGGTGCCTT
GATCGACAAATCCTGTGTCGCGCGCTGGACCCGGACGTTGTCCACCATGTTCGCTGCGGGCGTGCCGCTGGTGGAAGCGC
TTGACTCGGTGGGTGGAGCCGCTGGCAACTCTGTGTATTCCTTAGCCACGGACAAGATCCAGCAGGAAGTCTCTACAGGC
ACCAGCCTCACGGCAGCCATGGGCAATGCCAATATTTTCCCCTCCATGGTGCTGCAGATGTGCGCGATTGGCGAAGAATC
CGGCTCTATCGACCACATGCTTGGCAAGGCTGCCGACTTCTATGAAGCCGAGGTGGATGACATGGTGGCTGGCCTGTCCA
GCCTGATGGAGCCCATCATCATCGTGTTTCTGGGTACGCTCATCGGCGGTATCGTGGTATCCATGTACCTTCCCATCTTC
AAGCTCGGTCAGGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A561XRM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.455

99.507

0.542
  pilG Neisseria gonorrhoeae MS11

51.128

98.276

0.502
  pilG Neisseria meningitidis 44/76-A

50.877

98.276

0.5
  pilC Legionella pneumophila strain ERS1305867

49.497

98.03

0.485
  pilC Acinetobacter baylyi ADP1

48.995

98.03

0.48
  pilC Acinetobacter baumannii D1279779

47.355

97.783

0.463
  pilC Vibrio cholerae strain A1552

39.951

100

0.401
  pilC Vibrio campbellii strain DS40M4

38.25

98.522

0.377
  pilC Thermus thermophilus HB27

37.469

99.261

0.372

Multiple sequence alignment