Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACHFJ9_RS22905 Genome accession   NZ_CP171887
Coordinates   3206838..3207947 (-) Length   369 a.a.
NCBI ID   WP_006742929.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3201838..3212947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS22875 (ACHFJ9_22875) hemF 3202298..3203215 (-) 918 WP_395356399.1 oxygen-dependent coproporphyrinogen oxidase -
  ACHFJ9_RS22880 (ACHFJ9_22880) - 3203264..3203821 (-) 558 WP_395356401.1 L-threonylcarbamoyladenylate synthase -
  ACHFJ9_RS22885 (ACHFJ9_22885) purE 3204021..3204506 (+) 486 WP_046874601.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACHFJ9_RS22890 (ACHFJ9_22890) - 3204511..3205638 (+) 1128 WP_395356403.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACHFJ9_RS22895 (ACHFJ9_22895) - 3205708..3206277 (-) 570 WP_104971082.1 type I DNA topoisomerase -
  ACHFJ9_RS22900 (ACHFJ9_22900) - 3206356..3206835 (-) 480 WP_005379074.1 DUF494 family protein -
  ACHFJ9_RS22905 (ACHFJ9_22905) dprA 3206838..3207947 (-) 1110 WP_006742929.1 DNA-processing protein DprA Machinery gene
  ACHFJ9_RS22910 (ACHFJ9_22910) - 3207931..3209025 (-) 1095 WP_395356406.1 LysM peptidoglycan-binding domain-containing protein -
  ACHFJ9_RS22915 (ACHFJ9_22915) def 3209164..3209682 (+) 519 WP_005379068.1 peptide deformylase -
  ACHFJ9_RS22920 (ACHFJ9_22920) fmt 3209716..3210663 (+) 948 WP_213900055.1 methionyl-tRNA formyltransferase -
  ACHFJ9_RS22925 (ACHFJ9_22925) rsmB 3210744..3212027 (+) 1284 WP_025628789.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40085.73 Da        Isoelectric Point: 6.7200

>NTDB_id=1064671 ACHFJ9_RS22905 WP_006742929.1 3206838..3207947(-) (dprA) [Vibrio sp. D3]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVQGNSTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1064671 ACHFJ9_RS22905 WP_006742929.1 3206838..3207947(-) (dprA) [Vibrio sp. D3]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATCGGTGGGGTAAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTGCTTTTTGTTCAAGG
AAATTCTACTTGTCTTTCGCAGCCACAAATAGCAATGGTTGGCAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTGGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAATTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.74

100

0.837
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.321

97.832

0.434
  dprA Haemophilus influenzae Rd KW20

45.533

94.038

0.428
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment