Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACHFCC_RS02100 Genome accession   NZ_CP171806
Coordinates   441479..442579 (-) Length   366 a.a.
NCBI ID   WP_395142619.1    Uniprot ID   -
Organism   Schlegelella aquatica strain HS-12-14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 436479..447579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFCC_RS02085 (ACHFCC_02085) secF 437510..438544 (+) 1035 WP_395140429.1 protein translocase subunit SecF -
  ACHFCC_RS02090 (ACHFCC_02090) - 438590..440905 (+) 2316 WP_395140431.1 DUF1631 family protein -
  ACHFCC_RS02095 (ACHFCC_02095) - 440926..441372 (-) 447 WP_395140433.1 DUF494 family protein -
  ACHFCC_RS02100 (ACHFCC_02100) dprA 441479..442579 (-) 1101 WP_395142619.1 DNA-processing protein DprA Machinery gene
  ACHFCC_RS02105 (ACHFCC_02105) - 442631..443803 (-) 1173 WP_395140435.1 LysM peptidoglycan-binding domain-containing protein -
  ACHFCC_RS02110 (ACHFCC_02110) def 444061..444573 (+) 513 WP_395140437.1 peptide deformylase -
  ACHFCC_RS02115 (ACHFCC_02115) fmt 444587..445561 (+) 975 WP_395140439.1 methionyl-tRNA formyltransferase -
  ACHFCC_RS02120 (ACHFCC_02120) htpX 445623..446486 (+) 864 WP_395140441.1 zinc metalloprotease HtpX -
  ACHFCC_RS02125 (ACHFCC_02125) - 446606..446956 (+) 351 WP_395140443.1 hypothetical protein -
  ACHFCC_RS02130 (ACHFCC_02130) - 446991..447524 (-) 534 WP_395140445.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39109.68 Da        Isoelectric Point: 6.2850

>NTDB_id=1064283 ACHFCC_RS02100 WP_395142619.1 441479..442579(-) (dprA) [Schlegelella aquatica strain HS-12-14]
MDKDELAAWLRLLETPELGPQEARRLLAAFGSPQAVWEAGPTAWRALVPPEVAGALAAEPQGWAEHVETAWQWLGADPRR
AVVTLGDAHYPQRLLDIPDPPLLLYTLGRRELLNAPSLAIVGSRNPTPQGAENARCFARHLSQAGLTVVSGLALGIDGAA
HEGALEGPGRTVAVVGTGLDRVYPKRHLALAHRLADEGLIVSEYPLGTPPLKPNFPRRNRIISGMTRGTLVVEAAVHSGS
LITARLAAEQGREVFAIPGSIHSPQSRGCHLLIKQGAKLVESAQDILEELRLDAPGPAACTDPADRAPTARDPVLEALGH
DPASLDALVARTGWPAPELSARLLELELEGHVARLPGQLFQRIERA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1064283 ACHFCC_RS02100 WP_395142619.1 441479..442579(-) (dprA) [Schlegelella aquatica strain HS-12-14]
ATCGACAAGGACGAACTCGCCGCGTGGCTGCGGCTCCTCGAGACCCCTGAGCTCGGCCCGCAGGAAGCGCGCCGGCTGCT
CGCCGCCTTCGGCTCGCCGCAGGCGGTGTGGGAGGCCGGGCCCACCGCCTGGCGCGCGCTCGTACCCCCCGAGGTGGCCG
GCGCCCTGGCCGCCGAGCCGCAAGGCTGGGCCGAGCATGTGGAGACAGCCTGGCAGTGGCTTGGCGCCGACCCGCGCCGG
GCCGTCGTCACCCTGGGCGACGCGCACTACCCGCAGCGTCTGCTCGACATCCCCGACCCGCCCCTGCTGCTCTACACGCT
GGGCCGCCGCGAACTCCTCAATGCCCCGTCCCTCGCCATCGTGGGCAGCCGCAACCCGACGCCGCAAGGTGCCGAGAACG
CACGCTGCTTCGCCCGGCACCTCAGCCAGGCGGGCCTGACGGTGGTCTCCGGCCTGGCCCTGGGCATCGACGGCGCGGCA
CACGAAGGCGCCCTCGAAGGCCCCGGGCGCACGGTCGCCGTCGTCGGCACAGGCCTCGACCGCGTCTATCCGAAGCGACA
CCTGGCGCTCGCGCACCGCCTGGCCGACGAGGGGCTGATCGTGAGTGAGTACCCGCTCGGCACACCTCCTCTCAAGCCCA
ATTTCCCGCGGCGCAACCGCATCATCTCCGGCATGACGCGCGGCACGCTGGTCGTCGAGGCCGCGGTGCATTCGGGCTCG
TTGATCACCGCCCGGCTCGCAGCCGAGCAGGGACGCGAGGTGTTTGCCATCCCGGGATCGATCCACTCGCCGCAGTCTCG
CGGCTGCCACCTGCTCATCAAGCAGGGGGCCAAGCTCGTCGAAAGCGCGCAGGACATCCTGGAAGAACTGCGCCTGGATG
CGCCCGGCCCCGCCGCCTGCACTGACCCGGCCGACCGCGCGCCCACCGCCCGAGACCCGGTGCTCGAGGCCCTGGGCCAC
GACCCCGCCAGCCTCGACGCCCTGGTCGCGCGCACCGGCTGGCCCGCGCCCGAGCTCTCGGCCCGGCTGCTGGAGCTGGA
GCTCGAGGGCCACGTCGCCCGCTTGCCCGGCCAGCTGTTCCAGCGCATCGAACGGGCCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-281)

DprA winged helix domain (DprA_WH)

(303-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

44.221

100

0.481
  dprA Neisseria gonorrhoeae MS11

43.467

100

0.473
  dprA Neisseria meningitidis strain C311

42.929

100

0.464
  dprA Neisseria meningitidis MC58

42.929

100

0.464
  dprA Vibrio cholerae strain A1552

44.959

100

0.451
  dprA Vibrio campbellii strain DS40M4

41.803

100

0.418
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.741

95.902

0.391
  dprA Legionella pneumophila strain ERS1305867

46.758

80.055

0.374
  dprA Haemophilus influenzae Rd KW20

38.728

94.536

0.366
  dprA Glaesserella parasuis strain SC1401

45.89

79.781

0.366

Multiple sequence alignment