Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AABA14_RS09560 Genome accession   NZ_AP028607
Coordinates   1836695..1837951 (-) Length   418 a.a.
NCBI ID   WP_338168406.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831695..1842951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS09535 (TKY123642_18740) - 1831746..1831952 (-) 207 WP_000366093.1 hypothetical protein -
  AABA14_RS09540 (TKY123642_18750) - 1831939..1832100 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  AABA14_RS09545 (TKY123642_18770) lytA 1832465..1833421 (-) 957 WP_000405234.1 N-acetylmuramoyl-L-alanine amidase LytA -
  AABA14_RS09550 (TKY123642_18780) - 1833797..1835167 (-) 1371 WP_001036270.1 MATE family efflux transporter -
  AABA14_RS09555 (TKY123642_18790) recA 1835474..1836640 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  AABA14_RS09560 (TKY123642_18800) cinA 1836695..1837951 (-) 1257 WP_338168406.1 competence/damage-inducible protein A Machinery gene
  AABA14_RS09565 (TKY123642_18810) - 1838036..1839052 (-) 1017 WP_000239278.1 LCP family protein -
  AABA14_RS09570 (TKY123642_18820) - 1839060..1839578 (-) 519 WP_000455536.1 GNAT family N-acetyltransferase -
  AABA14_RS09575 (TKY123642_18830) tsaE 1839568..1840011 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  AABA14_RS09580 (TKY123642_18840) comM 1840097..1840717 (-) 621 WP_000839909.1 hypothetical protein Regulator
  AABA14_RS09585 (TKY123642_18850) - 1841100..1841963 (-) 864 WP_057516321.1 helix-turn-helix transcriptional regulator -
  AABA14_RS09590 (TKY123642_18860) - 1842152..1842322 (+) 171 WP_000742180.1 PhrA family quorum-sensing system peptide -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45002.42 Da        Isoelectric Point: 4.8263

>NTDB_id=106301 AABA14_RS09560 WP_338168406.1 1836695..1837951(-) (cinA) [Streptococcus pneumoniae strain Sep2]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNEVRLLSLLEIASQRSSLVILTGGLGPTEDDLTKQT
LAKFLGKALVFDPQAQEKLDIFFAQRPDYARTPNNERQAQIVEGAIPLPNETGLAVGGILEVDGVTYVVLPGPPSELKPI
VLNHLLPKLMTGSKLYSRVLRFFGIGESQLVTILADLIDNQTDPTLAPYAKTGEVTLRLSTKASSQEEANQALDILENQI
LNCQTFEGLSLRELCYGYGEESSLASIVVEKLKRQGKTITAAESLTAGLFQATVADFSGASSIFKGGFVTYSLEEKSKML
DIPVKDLEEHGVVSEFTAQKMAEQARSKTQSDFGISLTGVAGPDSLEGHPAGTVFIGLAQEHGTKVIKVNIGGRSRADVR
HIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=106301 AABA14_RS09560 WP_338168406.1 1836695..1837951(-) (cinA) [Streptococcus pneumoniae strain Sep2]
ATGAAAGCAGAAATCATTGCTGTTGGAACAGAGATTTTGACAGGACAGATTGTCAACACCAATGCCCAGTTTTTGTCGGA
AAAACTAGCTGAGATTGGGGTAGATGTATATTTTCAGACGGCTGTAGGAGACAATGAAGTTCGTCTCTTGTCTTTGCTTG
AGATTGCCAGTCAACGTAGCAGTCTGGTGATTTTGACAGGTGGTTTGGGGCCAACTGAGGACGACCTAACCAAACAAACC
TTGGCTAAATTCTTAGGGAAAGCATTGGTATTCGATCCTCAGGCTCAGGAGAAGTTGGATATCTTTTTTGCCCAGAGACC
AGACTATGCCCGAACACCGAATAACGAAAGACAAGCCCAAATTGTAGAAGGAGCGATTCCGCTGCCAAACGAAACAGGGC
TGGCTGTGGGAGGAATATTAGAAGTAGACGGAGTGACCTATGTCGTCCTTCCAGGTCCACCAAGTGAATTGAAACCTATA
GTCTTAAACCACCTTCTACCTAAGTTGATGACAGGAAGCAAGCTATATTCCCGAGTTCTTCGTTTCTTTGGGATTGGCGA
AAGTCAGTTGGTTACGATTTTGGCTGATTTGATTGATAATCAAACAGATCCGACCTTGGCCCCTTATGCTAAGACAGGAG
AAGTCACTCTGCGTCTGTCAACAAAAGCTAGCAGCCAAGAAGAGGCGAATCAGGCGCTGGATATCTTGGAAAATCAAATT
TTGAATTGCCAAACTTTTGAAGGCCTTTCTTTACGAGAACTTTGTTATGGTTATGGGGAAGAGTCCAGCTTGGCCAGCAT
TGTGGTAGAAAAGCTGAAAAGGCAAGGGAAAACTATCACGGCTGCAGAGAGTTTGACGGCAGGGCTTTTCCAAGCTACCG
TAGCAGATTTTTCAGGAGCTTCCAGTATATTTAAGGGTGGTTTTGTGACCTATAGCTTGGAGGAAAAATCAAAAATGTTG
GATATTCCTGTCAAGGATTTGGAAGAACATGGTGTAGTGTCTGAATTTACAGCCCAGAAGATGGCTGAGCAGGCACGAAG
CAAGACTCAGTCAGATTTTGGAATTAGTCTGACTGGAGTGGCAGGACCAGATAGCCTCGAAGGACACCCGGCTGGAACAG
TCTTCATAGGCTTGGCACAGGAGCATGGAACTAAGGTCATCAAGGTGAATATTGGAGGCAGAAGTCGAGCAGATGTACGT
CACATTGCGGTTATGCATGCCTTTAACCTAGTTCGCAAGGCTTTATTAAGTGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Competence-damaged protein (CinA)

(262-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

96.411

100

0.964
  cinA Streptococcus mitis NCTC 12261

94.976

100

0.95
  cinA Streptococcus pneumoniae TIGR4

94.737

100

0.947
  cinA Streptococcus pneumoniae R6

94.498

100

0.945
  cinA Streptococcus pneumoniae Rx1

94.498

100

0.945
  cinA Streptococcus pneumoniae D39

94.258

100

0.943
  cinA Streptococcus mutans UA159

71.77

100

0.718
  cinA Streptococcus suis isolate S10

54.567

99.522

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.455

Multiple sequence alignment