Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGI6K_RS16435 Genome accession   NZ_CP171449
Coordinates   3408926..3410140 (+) Length   404 a.a.
NCBI ID   WP_376943559.1    Uniprot ID   -
Organism   Azorhizophilus paspali strain ATCC 23833     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403926..3415140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGI6K_RS16420 (ACGI6K_16420) nadC 3404472..3405320 (+) 849 WP_376943538.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACGI6K_RS16425 (ACGI6K_16425) - 3405977..3406474 (-) 498 WP_376943536.1 pilin -
  ACGI6K_RS16430 (ACGI6K_16430) pilB 3407001..3408701 (+) 1701 WP_376943561.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACGI6K_RS16435 (ACGI6K_16435) pilC 3408926..3410140 (+) 1215 WP_376943559.1 type II secretion system F family protein Machinery gene
  ACGI6K_RS16440 (ACGI6K_16440) pilD 3410143..3411012 (+) 870 WP_376943534.1 prepilin peptidase Machinery gene
  ACGI6K_RS16445 (ACGI6K_16445) coaE 3411175..3411783 (+) 609 WP_376943532.1 dephospho-CoA kinase -
  ACGI6K_RS16450 (ACGI6K_16450) yacG 3411780..3411980 (+) 201 WP_041806982.1 DNA gyrase inhibitor YacG -
  ACGI6K_RS16455 (ACGI6K_16455) - 3412079..3412765 (-) 687 WP_376943530.1 energy-coupling factor ABC transporter permease -
  ACGI6K_RS16460 (ACGI6K_16460) - 3412762..3413229 (-) 468 WP_376943528.1 FAD/FMN-containing dehydrogenase -
  ACGI6K_RS16465 (ACGI6K_16465) - 3413226..3413651 (-) 426 WP_376943526.1 GNAT family N-acetyltransferase -
  ACGI6K_RS16470 (ACGI6K_16470) - 3413952..3414125 (+) 174 WP_012699847.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44226.11 Da        Isoelectric Point: 10.1829

>NTDB_id=1061257 ACGI6K_RS16435 WP_376943559.1 3408926..3410140(+) (pilC) [Azorhizophilus paspali strain ATCC 23833]
MAEKALKISLFTWEGIDRRGARIKGELSGRNPALVKAQLRKQGINPTKVRKKAGSPFGGQKIKALDIALFTRQMATMMKA
GVPLLQAFDIISEGFDKPAMRKLVYEVKQEVAAGNGFAASLRKKPRYFDDLYCNLVESGEQSGTLESLLERIATYKEKTE
ALKARIKKAMTYPIAVILVAIVVSAILLIKVVPQFQSVFANFGAELPAFTLLVVNLSEVLQEYWFYALLGIPTVVLILKQ
AHRRSEAFRNWTDRSLLKLPIVGQILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATKKIKADVTTGMQ
LNFSMRTTGTFPSMAIQMTAIGEESGTLDEMLDRVASFYEAEVDNMVDSLTGLLEPMIMAVLGVLVGGLIVAMYLPIFQL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1061257 ACGI6K_RS16435 WP_376943559.1 3408926..3410140(+) (pilC) [Azorhizophilus paspali strain ATCC 23833]
ATGGCGGAAAAAGCGTTGAAAATCAGTCTGTTCACCTGGGAGGGCATCGACCGGCGCGGTGCCAGGATCAAGGGAGAACT
GAGCGGGAGAAATCCGGCGCTGGTGAAGGCGCAACTGCGCAAGCAGGGCATCAATCCGACCAAGGTACGCAAGAAAGCCG
GTTCGCCGTTCGGCGGCCAGAAGATCAAAGCGCTGGATATCGCTCTATTCACCCGGCAGATGGCCACCATGATGAAAGCC
GGCGTGCCGCTGCTGCAGGCCTTCGACATCATCTCCGAGGGTTTCGACAAACCGGCCATGCGTAAGCTGGTGTACGAAGT
GAAACAGGAGGTGGCGGCGGGCAACGGTTTCGCCGCTTCACTGCGCAAGAAGCCTCGCTATTTCGACGACCTCTACTGCA
ACCTGGTGGAGTCCGGCGAGCAATCCGGCACCCTGGAAAGCCTGCTGGAGCGGATCGCCACCTACAAGGAGAAGACCGAG
GCGCTGAAGGCCAGGATCAAGAAGGCGATGACCTACCCTATCGCGGTGATCCTGGTGGCGATCGTCGTCTCGGCCATTCT
GCTAATAAAGGTGGTACCGCAATTCCAGTCGGTGTTCGCCAACTTCGGTGCCGAACTGCCGGCGTTTACGCTGCTGGTCG
TCAACCTGTCGGAAGTCCTGCAGGAATACTGGTTCTACGCACTGCTGGGGATACCCACTGTGGTTCTCATCCTGAAGCAG
GCCCACCGGCGCTCCGAGGCGTTTCGCAACTGGACGGATCGCAGCCTGCTGAAGCTGCCGATCGTCGGCCAAATCCTCTA
CAAGTCGGCGGTGGCCCGCTTCGCCCGTACCCTGTCCACCACTTTCGCCGCCGGTGTGCCGCTGGTCGACGCGCTCGACT
CGGTGGCCGGCGCCACCGGCAACGTGGTGTTCCGCAACGCCACCAAGAAGATCAAGGCCGACGTCACCACCGGCATGCAA
CTGAACTTCTCCATGCGCACCACCGGCACCTTCCCCAGCATGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGGCAC
GCTGGACGAAATGCTCGACAGGGTGGCGAGCTTCTACGAAGCCGAAGTGGACAACATGGTGGACAGCCTGACCGGTTTGC
TGGAGCCGATGATCATGGCGGTGCTCGGCGTGCTGGTCGGCGGCCTGATCGTCGCCATGTATCTGCCGATCTTCCAGTTG
GGCTCCGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.506

100

0.797
  pilC Acinetobacter baylyi ADP1

59.606

100

0.599
  pilC Acinetobacter baumannii D1279779

58.765

100

0.589
  pilC Legionella pneumophila strain ERS1305867

52.778

98.02

0.517
  pilG Neisseria meningitidis 44/76-A

43.97

98.515

0.433
  pilG Neisseria gonorrhoeae MS11

43.97

98.515

0.433
  pilC Vibrio cholerae strain A1552

42.222

100

0.423
  pilC Vibrio campbellii strain DS40M4

41.667

98.02

0.408

Multiple sequence alignment