Detailed information NTG1061258

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGI6K_RS16440
• Genome accession: NZ_CP171449
• Coordinates: 3410143..3411012 (+)
• Length: 289 a.a.
• NCBI ID: WP_376943534.1
• Uniprot ID: -
• Organism: Azorhizophilus paspali strain ATCC 23833
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3405143..3416012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGI6K_RS16425 (ACGI6K_16425)	-	3405977..3406474 (-)	498	WP_376943536.1	pilin	-
ACGI6K_RS16430 (ACGI6K_16430)	pilB	3407001..3408701 (+)	1701	WP_376943561.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACGI6K_RS16435 (ACGI6K_16435)	pilC	3408926..3410140 (+)	1215	WP_376943559.1	type II secretion system F family protein	Machinery gene
ACGI6K_RS16440 (ACGI6K_16440)	pilD	3410143..3411012 (+)	870	WP_376943534.1	prepilin peptidase	Machinery gene
ACGI6K_RS16445 (ACGI6K_16445)	coaE	3411175..3411783 (+)	609	WP_376943532.1	dephospho-CoA kinase	-
ACGI6K_RS16450 (ACGI6K_16450)	yacG	3411780..3411980 (+)	201	WP_041806982.1	DNA gyrase inhibitor YacG	-
ACGI6K_RS16455 (ACGI6K_16455)	-	3412079..3412765 (-)	687	WP_376943530.1	energy-coupling factor ABC transporter permease	-
ACGI6K_RS16460 (ACGI6K_16460)	-	3412762..3413229 (-)	468	WP_376943528.1	FAD/FMN-containing dehydrogenase	-
ACGI6K_RS16465 (ACGI6K_16465)	-	3413226..3413651 (-)	426	WP_376943526.1	GNAT family N-acetyltransferase	-
ACGI6K_RS16470 (ACGI6K_16470)	-	3413952..3414125 (+)	174	WP_012699847.1	DUF3094 domain-containing protein	-
ACGI6K_RS16475 (ACGI6K_16475)	-	3414190..3415488 (+)	1299	WP_376943524.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31752.79 Da
• Isoelectric Point: 6.8940

>NTDB_id=1061258 ACGI6K_RS16440 WP_376943534.1 3410143..3411012(+) (pilD) [Azorhizophilus paspali strain ATCC 23833]
MSIVDILAGPGLAFAVFAGLLGLLVGSFLNVVVHRLPKMMLRDWQAQAREVLELPDEPSGEPFNLLLPHSHCPHCGYRIR
PWENIPLLSWLLLGGHCSACKARIGARYPLVELTCGLLSAHVAWHYGFGWQAGAMLLLGWALLAMSLIDYDHQLLPDSLV
LPLLWLGLIFNSFGLFVSLEDALWGAVAGYLSLWSMYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQILPLTVLLSSLVG
AMLGIVILRLRKAESGTPIPFGPFLAFAGWIALLWGEQITAGYLRFVGL

Nucleotide

• Length: 870 bp

>NTDB_id=1061258 ACGI6K_RS16440 WP_376943534.1 3410143..3411012(+) (pilD) [Azorhizophilus paspali strain ATCC 23833]
ATGTCCATCGTCGATATTCTGGCCGGCCCCGGACTGGCCTTCGCCGTTTTCGCGGGGCTGCTGGGCCTGCTGGTCGGCAG
CTTTCTCAACGTGGTCGTCCACCGCCTGCCGAAGATGATGCTGCGCGACTGGCAGGCACAGGCACGGGAAGTGCTGGAAC
TGCCCGATGAGCCTTCCGGCGAGCCTTTCAATCTGCTGCTGCCCCACTCCCATTGCCCACATTGCGGGTACAGGATCAGG
CCCTGGGAGAATATCCCCCTACTCAGTTGGCTGCTCTTGGGTGGTCACTGCTCGGCCTGCAAGGCCCGGATCGGCGCGCG
CTACCCCCTGGTGGAGCTGACCTGCGGGCTGCTTTCGGCCCATGTCGCCTGGCATTACGGCTTCGGCTGGCAAGCCGGCG
CCATGCTGTTGCTCGGCTGGGCTCTGCTGGCCATGAGCCTGATCGATTACGATCATCAACTGCTGCCGGATTCGCTGGTG
TTACCCCTACTCTGGCTAGGTCTGATCTTCAACAGCTTCGGCCTGTTCGTTTCCCTGGAGGACGCCCTTTGGGGCGCGGT
GGCCGGCTATCTCAGCCTGTGGTCGATGTACTGGCTGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCGTACTGCTCTCCTCGCTGGTCGGC
GCCATGCTGGGGATCGTCATCCTGCGCCTGCGCAAGGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTTTCTCGCCTT
CGCCGGCTGGATCGCCCTGCTCTGGGGCGAGCAGATCACCGCCGGCTACCTGCGCTTCGTCGGTCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.143	94.464	0.54
pilD	Vibrio campbellii strain DS40M4	53.114	94.464	0.502
pilD	Acinetobacter nosocomialis M2	49.635	94.81	0.471
pilD	Acinetobacter baumannii D1279779	49.635	94.81	0.471
pilD	Neisseria gonorrhoeae MS11	50	92.734	0.464