Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFJIT_RS10070 Genome accession   NZ_CP170559
Coordinates   2304937..2306199 (+) Length   420 a.a.
NCBI ID   WP_130561824.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. UC19_8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2299937..2311199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIT_RS10055 (ACFJIT_10055) pilR 2300601..2302064 (+) 1464 WP_130561827.1 sigma-54 dependent transcriptional regulator Regulator
  ACFJIT_RS10060 (ACFJIT_10060) pilA2 2302416..2302862 (+) 447 WP_130561826.1 pilin Machinery gene
  ACFJIT_RS10065 (ACFJIT_10065) pilB 2303071..2304795 (+) 1725 WP_130561825.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFJIT_RS10070 (ACFJIT_10070) pilC 2304937..2306199 (+) 1263 WP_130561824.1 type II secretion system F family protein Machinery gene
  ACFJIT_RS10075 (ACFJIT_10075) - 2306203..2307066 (+) 864 WP_130561823.1 A24 family peptidase -
  ACFJIT_RS10080 (ACFJIT_10080) - 2307304..2308308 (-) 1005 WP_130561822.1 class I fructose-bisphosphate aldolase -
  ACFJIT_RS10085 (ACFJIT_10085) pyk 2308379..2309849 (-) 1471 Protein_1981 pyruvate kinase -
  ACFJIT_RS10090 (ACFJIT_10090) - 2310035..2310697 (-) 663 WP_379653537.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45223.46 Da        Isoelectric Point: 10.2521

>NTDB_id=1058023 ACFJIT_RS10070 WP_130561824.1 2304937..2306199(+) (pilC) [Pseudoxanthomonas sp. UC19_8]
MAVSRSAAKKSVPVTRDTKQLVTFVWQGTDKRGVKMKGEQEARNANLLRAELRGKGITPSVLKPKPKPLFGSAGKPIKQG
DIAFFSRQMATMMKSGVPIITSLEIIGGGHKNPRMKKMIEAIRTDIEGGSSLSEAIGKFPVQFDELYRNLVRAGEGAGVL
ETVLDTIATYKENLESLKGKIKKALFYPAMTIAVALIVSAILLIFVVPQFEAVFAGFGADLPAFTKLIVAASRVATSYWW
LALLVVGGGGFAFIFALKRSLPMQHALDRALLKVPVIGQILNNSAIARFARTLAVTFKAGVPLVEALDTVAGATGSTVYE
KAVFRIRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLIEPAIMVILGVL
VGGMVIGMYLPIFKLGEVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1058023 ACFJIT_RS10070 WP_130561824.1 2304937..2306199(+) (pilC) [Pseudoxanthomonas sp. UC19_8]
ATGGCCGTAAGCCGTTCAGCCGCCAAGAAATCCGTACCGGTCACGCGTGACACCAAGCAGTTGGTCACCTTCGTTTGGCA
AGGGACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGGAGGCGCGTAACGCCAATCTGCTAAGGGCGGAACTGCGCG
GCAAGGGCATCACGCCTTCCGTCCTCAAGCCCAAGCCCAAACCACTGTTCGGCTCGGCAGGCAAGCCGATCAAACAAGGT
GATATCGCGTTTTTCAGCCGTCAGATGGCGACCATGATGAAGTCGGGTGTGCCGATTATCACTTCGCTGGAGATCATCGG
CGGCGGACACAAAAACCCGCGAATGAAGAAGATGATCGAAGCGATCAGGACGGACATCGAAGGCGGCTCGTCGCTATCCG
AGGCGATCGGCAAGTTCCCCGTTCAGTTCGACGAGTTGTACCGCAACCTGGTTCGGGCCGGCGAAGGCGCGGGCGTCCTG
GAGACCGTGCTGGATACGATTGCCACCTACAAGGAGAACCTTGAATCCTTGAAGGGAAAAATCAAGAAGGCGCTGTTCTA
CCCTGCAATGACGATCGCGGTTGCGCTGATTGTCAGTGCGATTTTGCTCATTTTTGTCGTCCCTCAGTTTGAGGCGGTTT
TCGCTGGATTTGGCGCAGATCTTCCCGCCTTCACCAAGCTGATCGTGGCCGCCTCCAGGGTAGCAACCTCATATTGGTGG
CTTGCCCTTTTGGTTGTTGGTGGCGGTGGTTTCGCTTTCATCTTCGCGCTCAAGCGCTCCCTTCCAATGCAGCATGCACT
CGACCGCGCGCTGCTCAAGGTCCCAGTGATCGGCCAGATCCTCAACAACAGCGCCATCGCCCGTTTTGCGCGCACGTTGG
CGGTCACCTTTAAGGCAGGCGTTCCGCTGGTAGAAGCGCTGGACACTGTCGCAGGTGCCACAGGCAGCACGGTCTACGAG
AAGGCGGTGTTCCGCATCCGCGATGACGTAGCGGTCGGTTATCCGGTCAACATGGCAATGAAGCAGACCAACCTGTTTCC
GCATATGGTGATCCAGATGACCGCAATCGGTGAGGAGGCAGGTGCGCTGGACACGATGCTGTTCAAGGTGGCTGAGTACT
ACGAGCAGGAAGTGAACAATGCAGTCGATGCGCTGAGCAGTCTGATCGAGCCAGCCATCATGGTGATTCTGGGTGTGCTT
GTCGGCGGCATGGTCATCGGCATGTACCTGCCGATATTCAAGTTGGGCGAAGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.713

96.19

0.517
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.286

0.502
  pilC Acinetobacter baylyi ADP1

49.877

96.429

0.481
  pilC Acinetobacter baumannii D1279779

49.877

96.429

0.481
  pilG Neisseria gonorrhoeae MS11

43.216

94.762

0.41
  pilG Neisseria meningitidis 44/76-A

42.965

94.762

0.407
  pilC Vibrio campbellii strain DS40M4

39.951

97.143

0.388
  pilC Vibrio cholerae strain A1552

40.05

95.714

0.383

Multiple sequence alignment