Detailed information NTG1058020

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACFJIT_RS10055
• Genome accession: NZ_CP170559
• Coordinates: 2300601..2302064 (+)
• Length: 487 a.a.
• NCBI ID: WP_130561827.1
• Uniprot ID: -
• Organism: Pseudoxanthomonas sp. UC19_8
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2295601..2307064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFJIT_RS10040 (ACFJIT_10040)	sucD	2296624..2297499 (-)	876	WP_130519284.1	succinate--CoA ligase subunit alpha	-
ACFJIT_RS10045 (ACFJIT_10045)	sucC	2297523..2298692 (-)	1170	WP_130519285.1	ADP-forming succinate--CoA ligase subunit beta	-
ACFJIT_RS10050 (ACFJIT_10050)	-	2298881..2300509 (+)	1629	WP_130561828.1	PAS domain-containing sensor histidine kinase	-
ACFJIT_RS10055 (ACFJIT_10055)	pilR	2300601..2302064 (+)	1464	WP_130561827.1	sigma-54 dependent transcriptional regulator	Regulator
ACFJIT_RS10060 (ACFJIT_10060)	pilA2	2302416..2302862 (+)	447	WP_130561826.1	pilin	Machinery gene
ACFJIT_RS10065 (ACFJIT_10065)	pilB	2303071..2304795 (+)	1725	WP_130561825.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACFJIT_RS10070 (ACFJIT_10070)	pilC	2304937..2306199 (+)	1263	WP_130561824.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 487 a.a.
• Molecular weight: 52733.15 Da
• Isoelectric Point: 6.6011

>NTDB_id=1058020 ACFJIT_RS10055 WP_130561827.1 2300601..2302064(+) (pilR) [Pseudoxanthomonas sp. UC19_8]
MSDPRSALIVDDERDIRELLTLTLGRMGIRIDTAANLGEARALLARNAYDLCFTDMRLPDGNGIELVGEISRQFPKTPVA
MITAFGNVELAVEALKAGAFDFVSKPVDINVLRGLVKHALELNNVERPSPAPAPAQHAMRLLGESSAMRELRDTIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARSSGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAASGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGEIQVDVRILSATHKDLGELAHDGRFRHDLYYRINVIELRVPPLRERTGDLP
QLTGAILNRLAGSQGRPAPRLTPAAADALSQYAFPGNVRELENILERAMAMADEDAIDASDLRLPQGERRSAAAQPPPQS
PPPQDYDPFRSAPTPQFGQGLPSQSGASSAPTANEAEGPLPSYIEQMERAAIHKALEDNRWNKTKAAAQLGITFRALRYK
LKKLGIE

Nucleotide

• Length: 1464 bp

>NTDB_id=1058020 ACFJIT_RS10055 WP_130561827.1 2300601..2302064(+) (pilR) [Pseudoxanthomonas sp. UC19_8]
ATGAGCGACCCCCGAAGCGCCCTGATCGTCGATGACGAACGCGATATCCGCGAACTGCTGACCCTCACCCTGGGCCGCAT
GGGCATCCGCATCGACACCGCTGCCAACCTGGGCGAGGCGCGCGCGCTGCTGGCCCGCAATGCCTACGACCTGTGCTTCA
CCGACATGCGACTGCCCGACGGCAACGGCATCGAGCTGGTGGGCGAGATCTCGCGGCAGTTCCCCAAGACGCCGGTGGCG
ATGATCACTGCATTCGGCAATGTCGAGCTGGCGGTGGAGGCGCTCAAGGCGGGTGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCAACGTCCTGCGCGGCCTGGTCAAGCACGCGCTTGAACTCAACAACGTCGAGCGCCCCTCGCCGGCGCCCGCGC
CTGCCCAGCACGCGATGCGCCTGCTGGGCGAGTCGTCGGCGATGCGCGAGCTGCGCGACACCATCGCCAAGGTCGCCCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCCCGCACGATTCATGAGCAGGGCGC
GCGCTCGTCGGGTCCCTTCGTGCCGGTCAATTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTTACCGGCGCACACGCCGACAAGCAGGGCCTGTTCCAGGCGGCCAGCGGCGGCACCCTGTTCCTGGAC
GAGGTGGCCGAACTCCCGCTGCCCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTTCGCCCGGTCGGCGC
CTCGGGCGAGATCCAGGTCGACGTGCGCATTCTGTCGGCCACCCACAAGGACCTGGGCGAACTGGCCCACGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCACCGGCGACCTGCCG
CAGCTGACCGGCGCCATCCTTAACCGGCTGGCAGGCAGCCAGGGACGCCCGGCCCCGCGCCTGACCCCAGCCGCGGCGGA
TGCGCTGTCGCAGTACGCCTTCCCTGGCAACGTCCGTGAGCTGGAGAACATCCTAGAGCGCGCCATGGCCATGGCCGACG
AGGACGCCATCGACGCCAGCGATCTGCGCCTGCCGCAGGGTGAGCGCCGATCTGCCGCGGCGCAGCCTCCCCCACAGTCC
CCGCCGCCCCAGGACTACGACCCGTTCCGCTCCGCACCCACTCCCCAGTTCGGCCAAGGCCTGCCGTCGCAATCCGGCGC
CTCGTCCGCGCCAACGGCCAATGAAGCCGAAGGCCCGCTCCCCTCCTACATCGAACAGATGGAGCGCGCCGCCATTCACA
AGGCCCTGGAGGACAACCGCTGGAACAAGACCAAGGCTGCGGCCCAGCTCGGCATCACCTTCCGCGCCCTGCGCTACAAG
CTCAAGAAGCTCGGCATCGAATGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Bacterial regulatory protein, Fis family (HTH_8) (444-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.248	99.179	0.598
pilR	Acinetobacter baumannii strain A118	47.609	98.768	0.47