Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFJIW_RS23365 Genome accession   NZ_CP170554
Coordinates   5606187..5607467 (+) Length   426 a.a.
NCBI ID   WP_386067616.1    Uniprot ID   -
Organism   Tahibacter sp. UC22_41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5601187..5612467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIW_RS23345 (ACFJIW_23345) - 5601501..5602685 (-) 1185 WP_386067609.1 glycosyltransferase -
  ACFJIW_RS23350 (ACFJIW_23350) - 5602678..5603433 (-) 756 WP_386067610.1 class I SAM-dependent methyltransferase -
  ACFJIW_RS23355 (ACFJIW_23355) - 5603430..5604278 (-) 849 WP_386067612.1 glycosyltransferase family 2 protein -
  ACFJIW_RS23360 (ACFJIW_23360) pilB 5604456..5606183 (+) 1728 WP_386067614.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFJIW_RS23365 (ACFJIW_23365) pilC 5606187..5607467 (+) 1281 WP_386067616.1 type II secretion system F family protein Machinery gene
  ACFJIW_RS23370 (ACFJIW_23370) pilD 5607478..5608353 (+) 876 WP_386067618.1 prepilin peptidase Machinery gene
  ACFJIW_RS23375 (ACFJIW_23375) coaE 5608350..5608979 (+) 630 WP_386067619.1 dephospho-CoA kinase -
  ACFJIW_RS23380 (ACFJIW_23380) - 5608981..5609961 (-) 981 WP_386067621.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 45885.15 Da        Isoelectric Point: 10.2804

>NTDB_id=1057974 ACFJIW_RS23365 WP_386067616.1 5606187..5607467(+) (pilC) [Tahibacter sp. UC22_41]
MATATVSRKPAADSAQRGRARAEVSQMQTFVWAGKDKRGQAMKGEYSAKNISLVKAELRRQGINPTTVKAKAKPLFGAAG
KTIKARDIAVFSRQIAVMMQAGVPLVQGLDIIASGQSNVRMKNMLTAIKADIEGGSTLYEALGKFPIQFDELFCNLVKAG
ESAGVLDTVLDTVATYKENIESLKGKIKKAMFYPAIVFAVAILVSAILLIFVVPQFESVFKGFGADLPAFTQMIVAASRF
MTSYWWAMLLITGGTIGGLIFLYKRSKAFAHFCARAVLKLPVVGQILHQSAIARFARTLGVTFRAGVPLVEALDSVSGAT
GSPVYNAAVKRIREDVAVGHQLQLAMRQAQLFPNMVVQMVAIGEESGALDKMLFKVAEFYEEEVNNAVDALSSLLEPFIM
VIIGTLVGGMVIGMYLPIFKLAAVVG

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=1057974 ACFJIW_RS23365 WP_386067616.1 5606187..5607467(+) (pilC) [Tahibacter sp. UC22_41]
ATGGCAACCGCAACGGTTTCCCGCAAACCCGCCGCCGATTCCGCACAACGCGGCCGGGCGCGTGCCGAAGTCAGCCAGAT
GCAGACCTTCGTCTGGGCCGGCAAGGACAAGCGCGGCCAGGCCATGAAGGGCGAGTACTCGGCCAAGAACATCAGCCTGG
TCAAGGCCGAGCTGCGCCGCCAGGGCATCAACCCGACCACGGTCAAGGCCAAGGCCAAACCGCTGTTCGGCGCCGCCGGC
AAGACGATCAAGGCGCGCGACATCGCCGTGTTCAGCCGCCAGATCGCCGTGATGATGCAGGCGGGCGTGCCGCTGGTGCA
GGGCCTGGACATCATCGCGAGCGGCCAGAGCAACGTGCGCATGAAGAACATGCTGACCGCGATCAAGGCCGACATCGAGG
GCGGCTCCACGCTGTACGAAGCGCTGGGCAAGTTCCCGATCCAGTTCGACGAGCTGTTCTGCAACCTGGTCAAGGCCGGC
GAATCGGCCGGTGTGCTCGACACCGTGCTCGACACCGTCGCGACCTACAAGGAAAACATCGAATCGCTGAAGGGCAAGAT
CAAGAAGGCGATGTTCTACCCGGCCATCGTGTTCGCGGTCGCGATCCTCGTGTCGGCCATCCTGCTGATCTTCGTCGTGC
CGCAGTTCGAAAGCGTGTTCAAGGGCTTCGGCGCCGACCTGCCGGCCTTCACCCAGATGATCGTCGCCGCGTCGCGCTTC
ATGACCTCGTACTGGTGGGCCATGCTGCTGATCACCGGCGGCACGATCGGCGGCCTGATCTTCCTCTACAAACGCTCGAA
AGCTTTCGCCCATTTCTGCGCGCGCGCCGTGCTCAAGCTGCCCGTGGTCGGCCAGATCCTGCATCAGTCTGCGATCGCAC
GCTTCGCCCGCACGCTCGGCGTGACCTTCCGCGCCGGCGTGCCGCTGGTCGAGGCGCTGGACTCGGTCTCGGGCGCTACC
GGCAGCCCGGTCTACAACGCTGCGGTCAAGCGCATCCGCGAAGACGTCGCGGTCGGCCACCAGCTGCAGCTGGCCATGCG
TCAGGCGCAGCTGTTCCCGAACATGGTCGTGCAGATGGTCGCGATCGGCGAGGAATCCGGTGCGCTCGACAAGATGCTGT
TCAAGGTCGCCGAGTTCTACGAGGAAGAGGTCAACAACGCGGTCGACGCGCTGTCCAGCCTGCTCGAACCCTTCATCATG
GTGATCATCGGTACTCTCGTCGGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCCGCGGTCGTCGGCTG
A

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(91-214)

Type II secretion system (T2SS), protein F (T2SSF)

(295-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

58.942

93.192

0.549
  pilC Acinetobacter baumannii D1279779

53

93.897

0.498
  pilC Pseudomonas stutzeri DSM 10701

53.283

92.958

0.495
  pilC Acinetobacter baylyi ADP1

52.5

93.897

0.493
  pilG Neisseria gonorrhoeae MS11

41.791

94.366

0.394
  pilG Neisseria meningitidis 44/76-A

41.542

94.366

0.392
  pilC Vibrio campbellii strain DS40M4

39.461

95.775

0.378
  pilC Vibrio cholerae strain A1552

39

93.897

0.366

Multiple sequence alignment