Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACFJI0_RS02890 Genome accession   NZ_CP170552
Coordinates   546973..548190 (-) Length   405 a.a.
NCBI ID   WP_291121454.1    Uniprot ID   -
Organism   Hydrogenophaga sp. UC242_53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541973..553190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJI0_RS02860 (ACFJI0_02860) - 543129..544007 (+) 879 WP_382161360.1 ATP-binding protein -
  ACFJI0_RS02865 (ACFJI0_02865) - 544004..544456 (+) 453 WP_382323372.1 NUDIX domain-containing protein -
  ACFJI0_RS02870 (ACFJI0_02870) - 544487..544690 (-) 204 WP_382323373.1 DNA gyrase inhibitor YacG -
  ACFJI0_RS02875 (ACFJI0_02875) zapD 544699..545455 (-) 757 Protein_573 cell division protein ZapD -
  ACFJI0_RS02880 (ACFJI0_02880) coaE 545499..546113 (-) 615 WP_382323374.1 dephospho-CoA kinase -
  ACFJI0_RS02885 (ACFJI0_02885) - 546110..546973 (-) 864 WP_382323375.1 prepilin peptidase -
  ACFJI0_RS02890 (ACFJI0_02890) pilC 546973..548190 (-) 1218 WP_291121454.1 type II secretion system F family protein Machinery gene
  ACFJI0_RS02895 (ACFJI0_02895) pilB 548232..549965 (-) 1734 WP_382161347.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACFJI0_RS02905 (ACFJI0_02905) - 550252..551181 (-) 930 WP_382325896.1 polyprenyl synthetase family protein -
  ACFJI0_RS02910 (ACFJI0_02910) rplU 551446..551757 (+) 312 WP_382161335.1 50S ribosomal protein L21 -
  ACFJI0_RS02915 (ACFJI0_02915) rpmA 551771..552028 (+) 258 WP_297397423.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44351.02 Da        Isoelectric Point: 9.1426

>NTDB_id=1057939 ACFJI0_RS02890 WP_291121454.1 546973..548190(-) (pilC) [Hydrogenophaga sp. UC242_53]
MATAVSKNVKDAVFEWEGKDRNGKTVRGETRAAGENQVLAALRRQGIVPGKVKKRRMSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNANPSVTKLLNDIRTDVETGTSLSSAFRKHPLYFDSLYCNLVEAGEAAGILEELLDRLATYMEKT
EALKSKIKSALMYPIAVIIVAFVVVTIIMIFVIPSFKEVFSSFGADLPAPTLFVIAISEFFTEYWWLIFGVLGGGFYFFM
QAWRRNEKVQRFMDRLLLKLPIFGPLIEKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNSVYAIATERIQQEVSTGT
SLTNAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1057939 ACFJI0_RS02890 WP_291121454.1 546973..548190(-) (pilC) [Hydrogenophaga sp. UC242_53]
ATGGCAACCGCAGTATCCAAGAACGTCAAGGACGCCGTCTTCGAGTGGGAGGGCAAAGACCGCAACGGCAAGACCGTGCG
TGGAGAAACACGGGCCGCGGGAGAAAACCAGGTGTTGGCTGCGCTGCGGCGCCAGGGCATCGTGCCCGGCAAGGTCAAGA
AGCGCCGCATGAGTTCGGGCAAGCGCATCAAGCCCAAGGACATTGCCATCTTCACGCGCCAGCTGGCCACCATGATGAAA
GCCGGTGTGCCCCTGCTCCAGGCGTTCGACATCGTCGGCCGGGGCAACGCCAACCCCAGCGTCACCAAGCTGCTCAACGA
CATCCGCACCGATGTGGAAACCGGCACCTCGCTGAGTTCGGCGTTTCGCAAACACCCGTTGTACTTTGACAGCCTGTACT
GCAACCTCGTGGAAGCCGGTGAAGCCGCCGGTATTCTGGAGGAGTTGCTGGACCGCCTGGCGACTTACATGGAGAAGACC
GAGGCGCTCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCGATCGCCGTGATCATCGTGGCCTTCGTGGTGGTGACCAT
CATCATGATCTTCGTGATCCCCTCGTTCAAGGAGGTGTTCTCCTCCTTCGGCGCCGATCTGCCCGCGCCGACCCTGTTCG
TGATCGCGATAAGCGAGTTCTTCACCGAGTACTGGTGGTTGATCTTTGGCGTCCTCGGTGGCGGCTTCTACTTTTTCATG
CAGGCCTGGCGGCGCAATGAGAAGGTGCAGCGGTTCATGGACCGCCTGCTGCTCAAGCTGCCGATCTTTGGTCCATTGAT
CGAAAAATCGGTCATCGCCCGCTGGACGCGCACGCTGGCGACAATGTTCGCGGCGGGCGTGCCCCTGGTGGAAGCACTGG
ACTCGGTGGGTGGTGCATCGGGCAACTCGGTCTACGCCATCGCCACCGAACGGATCCAGCAGGAGGTGTCGACCGGCACC
AGCCTGACCAACGCCATGACCAACGCCAACATCTTCCCATCCATGGTGCTGCAGATGTGCGCCATCGGTGAGGAGTCGGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTATGAAGCCGAGGTCGACGACATGGTGGCGGGCATCTCCAGCC
TGATGGAGCCCATCATCATCGTTGTGCTGGGGACCGTCATTGGCGGTATCGTGGTGTCGATGTACCTTCCCATCTTCAAG
CTGGGCCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.726

99.259

0.543
  pilG Neisseria gonorrhoeae MS11

52.393

98.025

0.514
  pilG Neisseria meningitidis 44/76-A

52.141

98.025

0.511
  pilC Legionella pneumophila strain ERS1305867

51.263

97.778

0.501
  pilC Acinetobacter baylyi ADP1

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

48.403

100

0.486
  pilC Vibrio cholerae strain A1552

42.714

98.272

0.42
  pilC Vibrio campbellii strain DS40M4

40.25

98.765

0.398
  pilC Thermus thermophilus HB27

38.095

98.519

0.375

Multiple sequence alignment