Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFBML_RS15720 Genome accession   NZ_CP170491
Coordinates   3426236..3427345 (-) Length   369 a.a.
NCBI ID   WP_390338309.1    Uniprot ID   -
Organism   Vibrio harveyi strain LcV6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3421236..3432345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFBML_RS15690 (ACFBML_15690) hemF 3421765..3422682 (-) 918 WP_017817571.1 oxygen-dependent coproporphyrinogen oxidase -
  ACFBML_RS15695 (ACFBML_15695) - 3422717..3423274 (-) 558 WP_050903741.1 L-threonylcarbamoyladenylate synthase -
  ACFBML_RS15700 (ACFBML_15700) purE 3423474..3423959 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACFBML_RS15705 (ACFBML_15705) - 3423964..3425097 (+) 1134 WP_390338306.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACFBML_RS15710 (ACFBML_15710) - 3425161..3425730 (-) 570 WP_005450974.1 type I DNA topoisomerase -
  ACFBML_RS15715 (ACFBML_15715) - 3425754..3426233 (-) 480 WP_005429833.1 DUF494 family protein -
  ACFBML_RS15720 (ACFBML_15720) dprA 3426236..3427345 (-) 1110 WP_390338309.1 DNA-processing protein DprA Machinery gene
  ACFBML_RS15725 (ACFBML_15725) - 3427329..3428423 (-) 1095 WP_009699077.1 LysM peptidoglycan-binding domain-containing protein -
  ACFBML_RS15730 (ACFBML_15730) def 3428562..3429080 (+) 519 WP_005450979.1 peptide deformylase -
  ACFBML_RS15735 (ACFBML_15735) fmt 3429114..3430061 (+) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  ACFBML_RS15740 (ACFBML_15740) rsmB 3430143..3431426 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39805.53 Da        Isoelectric Point: 5.8688

>NTDB_id=1057706 ACFBML_RS15720 WP_390338309.1 3426236..3427345(-) (dprA) [Vibrio harveyi strain LcV6]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWVSASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKYDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1057706 ACFBML_RS15720 WP_390338309.1 3426236..3427345(-) (dprA) [Vibrio harveyi strain LcV6]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGTTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAATATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGATCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(314-362)

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.954

100

0.93
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.4

100

0.472
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

48.986

80.217

0.393
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371

Multiple sequence alignment