Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACFBML_RS12820 | Genome accession | NZ_CP170491 |
| Coordinates | 2844650..2845087 (+) | Length | 145 a.a. |
| NCBI ID | WP_029790345.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain LcV6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2839650..2850087
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFBML_RS12805 (ACFBML_12805) | pdhR | 2841681..2842448 (-) | 768 | WP_005446261.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACFBML_RS12810 (ACFBML_12810) | ampD | 2842853..2843404 (-) | 552 | WP_017189135.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACFBML_RS12815 (ACFBML_12815) | nadC | 2843497..2844384 (+) | 888 | WP_053049427.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACFBML_RS12820 (ACFBML_12820) | pilA | 2844650..2845087 (+) | 438 | WP_029790345.1 | pilin | Machinery gene |
| ACFBML_RS12825 (ACFBML_12825) | pilB | 2845099..2846784 (+) | 1686 | WP_005446257.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACFBML_RS12830 (ACFBML_12830) | pilC | 2846818..2848041 (+) | 1224 | WP_005446256.1 | type II secretion system F family protein | Machinery gene |
| ACFBML_RS12835 (ACFBML_12835) | pilD | 2848114..2848983 (+) | 870 | WP_005446255.1 | A24 family peptidase | Machinery gene |
| ACFBML_RS12840 (ACFBML_12840) | coaE | 2848984..2849598 (+) | 615 | WP_017817675.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14897.02 Da Isoelectric Point: 9.7639
>NTDB_id=1057686 ACFBML_RS12820 WP_029790345.1 2844650..2845087(+) (pilA) [Vibrio harveyi strain LcV6]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTAAQLPVPTSP
LGVISYTASASGASSSSGAIKFTFNSSGVSPDVISKDVTLGRDGTGQWNCTSGITATGVKPKACS
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTAAQLPVPTSP
LGVISYTASASGASSSSGAIKFTFNSSGVSPDVISKDVTLGRDGTGQWNCTSGITATGVKPKACS
Nucleotide
Download Length: 438 bp
>NTDB_id=1057686 ACFBML_RS12820 WP_029790345.1 2844650..2845087(+) (pilA) [Vibrio harveyi strain LcV6]
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
GGCAGCGATTGCCGTCCCGCAGTACCAAAAATACGTAGCTAAAAGTGAAGCAGCTTCAGCACTAGCATCAATTACTGGAC
ATAGAATAAATGTTGAAACTTATGTTGTTGAAAATGGATCATTTCCGACAGCAGCACAGCTACCTGTTCCGACCTCACCA
CTCGGTGTAATTAGTTACACTGCCTCAGCTTCAGGAGCAAGCTCATCATCAGGTGCAATAAAGTTTACGTTTAATAGTTC
AGGTGTAAGTCCAGACGTAATCAGCAAAGACGTAACCCTTGGGCGAGATGGTACTGGTCAATGGAACTGCACCTCTGGCA
TCACTGCTACAGGTGTAAAACCTAAAGCATGTTCATAA
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
GGCAGCGATTGCCGTCCCGCAGTACCAAAAATACGTAGCTAAAAGTGAAGCAGCTTCAGCACTAGCATCAATTACTGGAC
ATAGAATAAATGTTGAAACTTATGTTGTTGAAAATGGATCATTTCCGACAGCAGCACAGCTACCTGTTCCGACCTCACCA
CTCGGTGTAATTAGTTACACTGCCTCAGCTTCAGGAGCAAGCTCATCATCAGGTGCAATAAAGTTTACGTTTAATAGTTC
AGGTGTAAGTCCAGACGTAATCAGCAAAGACGTAACCCTTGGGCGAGATGGTACTGGTCAATGGAACTGCACCTCTGGCA
TCACTGCTACAGGTGTAAAACCTAAAGCATGTTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.403 |
100 |
0.503 |
| pilA | Vibrio cholerae strain A1552 |
47.403 |
100 |
0.503 |
| pilA | Vibrio cholerae C6706 |
47.403 |
100 |
0.503 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.667 |
100 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
42.282 |
100 |
0.434 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.096 |
100 |
0.414 |
| pilA | Acinetobacter baumannii strain A118 |
41.606 |
94.483 |
0.393 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.571 |
96.552 |
0.372 |