Detailed information NTG1057689

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACFBML_RS12835
• Genome accession: NZ_CP170491
• Coordinates: 2848114..2848983 (+)
• Length: 289 a.a.
• NCBI ID: WP_005446255.1
• Uniprot ID: A0A3A1Q6Q3
• Organism: Vibrio harveyi strain LcV6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2843114..2853983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFBML_RS12815 (ACFBML_12815)	nadC	2843497..2844384 (+)	888	WP_053049427.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACFBML_RS12820 (ACFBML_12820)	pilA	2844650..2845087 (+)	438	WP_029790345.1	pilin	Machinery gene
ACFBML_RS12825 (ACFBML_12825)	pilB	2845099..2846784 (+)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACFBML_RS12830 (ACFBML_12830)	pilC	2846818..2848041 (+)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
ACFBML_RS12835 (ACFBML_12835)	pilD	2848114..2848983 (+)	870	WP_005446255.1	A24 family peptidase	Machinery gene
ACFBML_RS12840 (ACFBML_12840)	coaE	2848984..2849598 (+)	615	WP_017817675.1	dephospho-CoA kinase	-
ACFBML_RS12845 (ACFBML_12845)	zapD	2849626..2850366 (+)	741	WP_050934119.1	cell division protein ZapD	-
ACFBML_RS12850 (ACFBML_12850)	yacG	2850429..2850623 (+)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
ACFBML_RS12855 (ACFBML_12855)	rplS	2850912..2851265 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACFBML_RS12860 (ACFBML_12860)	trmD	2851307..2852050 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACFBML_RS12865 (ACFBML_12865)	rimM	2852078..2852626 (-)	549	WP_005446245.1	ribosome maturation factor RimM	-
ACFBML_RS12870 (ACFBML_12870)	rpsP	2852655..2852903 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32536.74 Da
• Isoelectric Point: 7.5422

>NTDB_id=1057689 ACFBML_RS12835 WP_005446255.1 2848114..2848983(+) (pilD) [Vibrio harveyi strain LcV6]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1057689 ACFBML_RS12835 WP_005446255.1 2848114..2848983(+) (pilD) [Vibrio harveyi strain LcV6]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A3A1Q6Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436