Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCT18_RS01325 | Genome accession | NZ_CP170034 |
| Coordinates | 297213..297632 (+) | Length | 139 a.a. |
| NCBI ID | WP_016790035.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.222.54.F11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 292213..302632
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCT18_RS01310 (BCT18_01310) | pdhR | 294142..294903 (-) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BCT18_RS01315 (BCT18_01315) | ampD | 295385..295984 (-) | 600 | WP_016790757.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCT18_RS01320 (BCT18_01320) | nadC | 296068..296958 (+) | 891 | WP_016790034.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCT18_RS01325 (BCT18_01325) | pilA | 297213..297632 (+) | 420 | WP_016790035.1 | pilin | Machinery gene |
| BCT18_RS01330 (BCT18_01330) | pilB | 297633..299318 (+) | 1686 | WP_016790036.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCT18_RS01335 (BCT18_01335) | pilC | 299334..300563 (+) | 1230 | WP_016791284.1 | type II secretion system F family protein | Machinery gene |
| BCT18_RS01340 (BCT18_01340) | pilD | 300630..301499 (+) | 870 | WP_102277664.1 | prepilin peptidase | Machinery gene |
| BCT18_RS01345 (BCT18_01345) | coaE | 301502..302116 (+) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14279.18 Da Isoelectric Point: 4.9998
>NTDB_id=1054861 BCT18_RS01325 WP_016790035.1 297213..297632(+) (pilA) [Vibrio cyclitrophicus strain 10N.222.54.F11]
MNNKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSEASSALATLKSLQTPAELTFQEEGALSSAISALGVSSGS
NTLGTLSISNVGSSTVSPEILFTFNGGSLNSATLTLSRDATTGWACTKSTAVPDLDGCR
MNNKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSEASSALATLKSLQTPAELTFQEEGALSSAISALGVSSGS
NTLGTLSISNVGSSTVSPEILFTFNGGSLNSATLTLSRDATTGWACTKSTAVPDLDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=1054861 BCT18_RS01325 WP_016790035.1 297213..297632(+) (pilA) [Vibrio cyclitrophicus strain 10N.222.54.F11]
ATGAATAACAAAAGAACGAACCAGAAAGGCTTTACGCTGATTGAATTAATGATTGTAGTGGCGATTATTGGTGTGCTATC
GGCAATTGCAGTACCTGCTTACAAGGATTACGTATCTAAGAGTGAGGCATCATCAGCTCTTGCGACTTTAAAATCACTGC
AAACACCAGCAGAGCTTACCTTTCAAGAAGAGGGGGCTCTTAGTAGCGCAATATCAGCTCTTGGAGTTTCTTCAGGATCC
AACACGTTAGGAACTTTAAGCATTAGCAACGTTGGTTCATCAACAGTTTCTCCGGAAATTCTATTTACATTTAACGGGGG
CTCACTAAACAGTGCTACATTAACATTATCTCGTGATGCGACAACTGGTTGGGCTTGTACAAAATCAACGGCAGTTCCCG
ATTTAGATGGTTGCCGATAA
ATGAATAACAAAAGAACGAACCAGAAAGGCTTTACGCTGATTGAATTAATGATTGTAGTGGCGATTATTGGTGTGCTATC
GGCAATTGCAGTACCTGCTTACAAGGATTACGTATCTAAGAGTGAGGCATCATCAGCTCTTGCGACTTTAAAATCACTGC
AAACACCAGCAGAGCTTACCTTTCAAGAAGAGGGGGCTCTTAGTAGCGCAATATCAGCTCTTGGAGTTTCTTCAGGATCC
AACACGTTAGGAACTTTAAGCATTAGCAACGTTGGTTCATCAACAGTTTCTCCGGAAATTCTATTTACATTTAACGGGGG
CTCACTAAACAGTGCTACATTAACATTATCTCGTGATGCGACAACTGGTTGGGCTTGTACAAAATCAACGGCAGTTCCCG
ATTTAGATGGTTGCCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.921 |
100 |
0.489 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.726 |
100 |
0.417 |
| pilA | Pseudomonas aeruginosa PAK |
42.105 |
95.683 |
0.403 |
| pilA | Vibrio cholerae C6706 |
40.152 |
94.964 |
0.381 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.152 |
94.964 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
40.152 |
94.964 |
0.381 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
93.525 |
0.374 |