Detailed information NTG1054864

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCT18_RS01340
• Genome accession: NZ_CP170034
• Coordinates: 300630..301499 (+)
• Length: 289 a.a.
• NCBI ID: WP_102277664.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.222.54.F11
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 295630..306499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCT18_RS01320 (BCT18_01320)	nadC	296068..296958 (+)	891	WP_016790034.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BCT18_RS01325 (BCT18_01325)	pilA	297213..297632 (+)	420	WP_016790035.1	pilin	Machinery gene
BCT18_RS01330 (BCT18_01330)	pilB	297633..299318 (+)	1686	WP_016790036.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCT18_RS01335 (BCT18_01335)	pilC	299334..300563 (+)	1230	WP_016791284.1	type II secretion system F family protein	Machinery gene
BCT18_RS01340 (BCT18_01340)	pilD	300630..301499 (+)	870	WP_102277664.1	prepilin peptidase	Machinery gene
BCT18_RS01345 (BCT18_01345)	coaE	301502..302116 (+)	615	WP_010435920.1	dephospho-CoA kinase	-
BCT18_RS01350 (BCT18_01350)	zapD	302143..302883 (+)	741	WP_010435917.1	cell division protein ZapD	-
BCT18_RS01355 (BCT18_01355)	yacG	302965..303162 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCT18_RS01360 (BCT18_01360)	rplS	303458..303811 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
BCT18_RS01365 (BCT18_01365)	trmD	303871..304611 (-)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCT18_RS01370 (BCT18_01370)	rimM	304638..305192 (-)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCT18_RS01375 (BCT18_01375)	rpsP	305217..305465 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32548.70 Da
• Isoelectric Point: 7.9444

>NTDB_id=1054864 BCT18_RS01340 WP_102277664.1 300630..301499(+) (pilD) [Vibrio cyclitrophicus strain 10N.222.54.F11]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPTIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054864 BCT18_RS01340 WP_102277664.1 300630..301499(+) (pilD) [Vibrio cyclitrophicus strain 10N.222.54.F11]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAACGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCCATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	49.035	89.619	0.439