Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCT87_RS04175 Genome accession   NZ_CP170031
Coordinates   1015138..1016367 (+) Length   409 a.a.
NCBI ID   WP_016799551.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.261.52.C4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010138..1021367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCT87_RS04155 (BCT87_04155) ampD 1011168..1011767 (-) 600 WP_065107040.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BCT87_RS04160 (BCT87_04160) nadC 1011851..1012741 (+) 891 WP_065107041.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCT87_RS04165 (BCT87_04165) - 1012996..1013436 (+) 441 WP_065107042.1 pilin -
  BCT87_RS04170 (BCT87_04170) pilB 1013437..1015122 (+) 1686 WP_065107043.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCT87_RS04175 (BCT87_04175) pilC 1015138..1016367 (+) 1230 WP_016799551.1 type II secretion system F family protein Machinery gene
  BCT87_RS04180 (BCT87_04180) pilD 1016434..1017303 (+) 870 WP_016795167.1 prepilin peptidase Machinery gene
  BCT87_RS04185 (BCT87_04185) coaE 1017306..1017920 (+) 615 WP_010435920.1 dephospho-CoA kinase -
  BCT87_RS04190 (BCT87_04190) zapD 1017947..1018687 (+) 741 WP_010435917.1 cell division protein ZapD -
  BCT87_RS04195 (BCT87_04195) yacG 1018769..1018966 (+) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCT87_RS04200 (BCT87_04200) rplS 1019241..1019594 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCT87_RS04205 (BCT87_04205) trmD 1019654..1020394 (-) 741 WP_016799553.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCT87_RS04210 (BCT87_04210) rimM 1020421..1020975 (-) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCT87_RS04215 (BCT87_04215) rpsP 1021000..1021248 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45191.14 Da        Isoelectric Point: 10.1000

>NTDB_id=1054822 BCT87_RS04175 WP_016799551.1 1015138..1016367(+) (pilC) [Vibrio cyclitrophicus strain 10N.261.52.C4]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAITRITHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATTL
VVHQLCQRSYSIRLSASRLVLRFPVLGSVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054822 BCT87_RS04175 WP_016799551.1 1015138..1016367(+) (pilC) [Vibrio cyclitrophicus strain 10N.261.52.C4]
ATGAGTAGCAAGTCCAAACAGTCACAATTAAAAAGCTATCACTGGAAAGGCATTAACAGCTCTGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTTACTGAATTAGAAGTACGGGAAAAGCTCAAAGAGCAGCATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCAGCAATCACTCGCATAACACACCGAGTCAAAGCCAAGGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATCGTGCAAGCCATAAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCGAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGCGAACCGCAAGCCGCCACTTTGATG
ATCTCTATACTGATTTAGTCGCGACAGGAGAGCTCTCCGGCAATCTTGCACAAGTATTCGAACGCTTAGCGACATATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTAACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCACGCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTTGG
TAGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGCTCTGGTATTCCCATCTTAA
TGAGCCTCAAAACCACCGCAAAGACTGCAGGTAATCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAATTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.5

97.8

0.778
  pilC Vibrio campbellii strain DS40M4

73.892

99.267

0.734
  pilC Acinetobacter baylyi ADP1

42.054

100

0.421
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Legionella pneumophila strain ERS1305867

41.814

97.066

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.657

96.822

0.394
  pilG Neisseria gonorrhoeae MS11

40.351

97.555

0.394
  pilG Neisseria meningitidis 44/76-A

40.1

97.555

0.391

Multiple sequence alignment