Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BCT87_RS04180 | Genome accession | NZ_CP170031 |
| Coordinates | 1016434..1017303 (+) | Length | 289 a.a. |
| NCBI ID | WP_016795167.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.261.52.C4 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1011434..1022303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCT87_RS04160 (BCT87_04160) | nadC | 1011851..1012741 (+) | 891 | WP_065107041.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCT87_RS04165 (BCT87_04165) | - | 1012996..1013436 (+) | 441 | WP_065107042.1 | pilin | - |
| BCT87_RS04170 (BCT87_04170) | pilB | 1013437..1015122 (+) | 1686 | WP_065107043.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCT87_RS04175 (BCT87_04175) | pilC | 1015138..1016367 (+) | 1230 | WP_016799551.1 | type II secretion system F family protein | Machinery gene |
| BCT87_RS04180 (BCT87_04180) | pilD | 1016434..1017303 (+) | 870 | WP_016795167.1 | prepilin peptidase | Machinery gene |
| BCT87_RS04185 (BCT87_04185) | coaE | 1017306..1017920 (+) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
| BCT87_RS04190 (BCT87_04190) | zapD | 1017947..1018687 (+) | 741 | WP_010435917.1 | cell division protein ZapD | - |
| BCT87_RS04195 (BCT87_04195) | yacG | 1018769..1018966 (+) | 198 | WP_010435916.1 | DNA gyrase inhibitor YacG | - |
| BCT87_RS04200 (BCT87_04200) | rplS | 1019241..1019594 (-) | 354 | WP_004735514.1 | 50S ribosomal protein L19 | - |
| BCT87_RS04205 (BCT87_04205) | trmD | 1019654..1020394 (-) | 741 | WP_016799553.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BCT87_RS04210 (BCT87_04210) | rimM | 1020421..1020975 (-) | 555 | WP_016768202.1 | ribosome maturation factor RimM | - |
| BCT87_RS04215 (BCT87_04215) | rpsP | 1021000..1021248 (-) | 249 | WP_004410028.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32539.74 Da Isoelectric Point: 7.6347
>NTDB_id=1054823 BCT87_RS04180 WP_016795167.1 1016434..1017303(+) (pilD) [Vibrio cyclitrophicus strain 10N.261.52.C4]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIIMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIIMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
Nucleotide
Download Length: 870 bp
>NTDB_id=1054823 BCT87_RS04180 WP_016795167.1 1016434..1017303(+) (pilD) [Vibrio cyclitrophicus strain 10N.261.52.C4]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATAATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTTTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATAATGGAGCGTGAGTGGCAACAAGAGTGCTCGGAGTATTTTTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
74.74 |
100 |
0.747 |
| pilD | Vibrio cholerae strain A1552 |
69.097 |
99.654 |
0.689 |
| pilD | Acinetobacter nosocomialis M2 |
50.936 |
92.388 |
0.471 |
| pilD | Acinetobacter baumannii D1279779 |
50.562 |
92.388 |
0.467 |
| pilD | Neisseria gonorrhoeae MS11 |
48.263 |
89.619 |
0.433 |