Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BCU15_RS14120 Genome accession   NZ_CP170028
Coordinates   3142818..3144509 (-) Length   563 a.a.
NCBI ID   WP_102341165.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.261.55.B9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3137818..3149509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU15_RS14100 (BCU15_14100) - 3138497..3139342 (-) 846 WP_010435266.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  BCU15_RS14105 (BCU15_14105) - 3139412..3140929 (-) 1518 WP_016787695.1 SPOR domain-containing protein -
  BCU15_RS14110 (BCU15_14110) aroB 3141010..3142098 (-) 1089 WP_010435273.1 3-dehydroquinate synthase -
  BCU15_RS14115 (BCU15_14115) aroK 3142123..3142641 (-) 519 WP_009848907.1 shikimate kinase AroK -
  BCU15_RS14120 (BCU15_14120) pilQ 3142818..3144509 (-) 1692 WP_102341165.1 type IV pilus secretin PilQ Machinery gene
  BCU15_RS14125 (BCU15_14125) pilP 3144569..3145087 (-) 519 WP_016787693.1 pilus assembly protein PilP Machinery gene
  BCU15_RS14130 (BCU15_14130) pilO 3145074..3145703 (-) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  BCU15_RS14135 (BCU15_14135) pilN 3145696..3146310 (-) 615 WP_010435288.1 PilN domain-containing protein Machinery gene
  BCU15_RS14140 (BCU15_14140) pilM 3146294..3147319 (-) 1026 WP_016787692.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 61447.99 Da        Isoelectric Point: 4.3414

>NTDB_id=1054803 BCU15_RS14120 WP_102341165.1 3142818..3144509(-) (pilQ) [Vibrio cyclitrophicus strain 10N.261.55.B9]
MNRGLQGIVLSVVLFFTVMSHAETSNKLENIDFRVNKDKEAVIIIELATTTAVVDVQRVQEGLSIELINTEVDDDKLYLL
DVKDFAILVEGIEVFRELPSTRLLANISNDYQYEYNLKGRFIEVVVSQPKIDEAAIEKSILEKEGKLISINFQDIPVRNV
LQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELGE
LKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSMLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTVT
EGNLDELGVRWGVSSNNGSFTVGGSIEGNHPSQITPYDDNGGNSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDLE
LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPG
QVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKV
VIQ

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1054803 BCU15_RS14120 WP_102341165.1 3142818..3144509(-) (pilQ) [Vibrio cyclitrophicus strain 10N.261.55.B9]
ATGAACAGAGGGCTGCAAGGCATTGTGTTGTCGGTGGTGTTGTTTTTTACGGTGATGAGTCATGCAGAGACCTCCAACAA
GCTGGAGAATATTGATTTCAGGGTCAACAAGGACAAAGAAGCGGTCATCATTATTGAACTGGCAACGACTACTGCGGTTG
TCGATGTTCAGCGAGTGCAAGAAGGGTTGAGTATTGAACTGATCAATACTGAGGTTGACGACGATAAACTGTACCTACTG
GACGTAAAGGACTTTGCGATTTTAGTTGAGGGGATTGAAGTCTTTAGGGAGTTGCCGAGCACTCGGCTGTTGGCAAACAT
CTCCAATGACTACCAATATGAGTACAACCTCAAAGGACGTTTTATTGAGGTTGTTGTGAGTCAGCCTAAGATCGATGAAG
CTGCGATTGAGAAAAGTATCTTAGAAAAAGAGGGCAAACTGATATCGATTAACTTCCAAGATATCCCGGTACGAAATGTC
TTGCAGCTGATTGCCGATTACAATGATTTCAATCTAGTCGTATCTGATTCGGTGGCAGGTAACCTAACTTTACGTTTAGA
TGGCGTACCTTGGCAGCAAGTTCTCGATATTATCTTGCAAGTTAAAGGCTTAGATAAACGTGTTGATGGCAACGTTATTT
TGGTCGCACCGAAAGCGGAACTCGATCTTCGAGAGCAGCAAGCGCTCGAGAAATCGCGTTTAGAAGAGGAGTTGGGTGAA
CTCAAATCTGAAATCATCAAAATCAACTTTGCTAAAGCGACCGACATTGCCGACATGATTGGCGGTGAAGGTGCGGTGAG
TATGTTGTCTGATCGAGGTTCAATTACCATTGATGAACGAACCAACTCAATGCTCATTCGTGAGTTGGAAGAAAACATTG
CGGTGATCCGAGGCATCATTGAATCGCTAGATATTCCGGTGAAGCAAGTTCAGATAGAGGCGCGCATCGTAACTGTCACC
GAGGGTAACCTGGATGAGCTTGGTGTGCGCTGGGGCGTTTCCTCAAACAACGGAAGCTTCACCGTTGGCGGTTCAATTGA
AGGCAACCACCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAATAGTGCGATTGATGATTATCTCAACGTCAATT
TAGGGGCAACATCGCCGAACGCATCGAGTATTGCGTTTCAGGTTGCTAAGTTGGGTTCGGATACGCTGCTCGATCTTGAA
TTATCAGCGCTACAACAAGAATCTAAAGCCGAAATAATTTCGAGCCCACGCTTAATCACCACCAATAAAAAACCGGCTTA
TATTGAGCAAGGTACGGAAATTCCTTATTTGGAGTCCTCTTCAAGTGGTGCAACGTCGGTCGCATTTAAGAAAGCGGTAT
TAAGTTTGAAGGTGACACCGCAGATCACGCCAGATAACCGCTTAGTGTTGGACTTGAGTGTGACTCAAGATAGACCTGGG
CAGGTAGTGAAAACAGGAACGGGCGAAGCAGTGGCCATTGATACTCAACGAATAGGAACGCAAGTGCTTGTTAATAATGG
TGAAACAGTCGTACTTGGCGGGATTTTTCAACATAGTGTCAGCAGTACTGTCGACAAAGTTCCGCTGTTGGGCGACCTGC
CAGTTTTAGGCGCATTGTTCCGTCGCAGCTATGAAAATGTAGGCAAAAGTGAACTGCTTATTTTTGTTACACCTAAAGTT
GTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(403-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

80.917

96.803

0.783
  pilQ Vibrio cholerae strain A1552

79.779

96.625

0.771
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

79.779

96.625

0.771
  pilQ Legionella pneumophila strain ERS1305867

42.857

96.98

0.416
  pilQ Legionella pneumophila strain Lp02

42.857

96.98

0.416
  pilQ Pseudomonas aeruginosa PAK

40.071

100

0.401
  pilQ Acinetobacter baumannii D1279779

37

100

0.394
  pilQ Acinetobacter baumannii strain A118

37

100

0.394
  comQ Acinetobacter baylyi ADP1

38.869

100

0.391

Multiple sequence alignment