Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCU92_RS11050 Genome accession   NZ_CP170017
Coordinates   2365586..2366815 (-) Length   409 a.a.
NCBI ID   WP_016791284.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.52.C10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2360586..2371815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU92_RS11010 (BCU92_11010) rpsP 2360705..2360953 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  BCU92_RS11015 (BCU92_11015) rimM 2360978..2361532 (+) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCU92_RS11020 (BCU92_11020) trmD 2361559..2362299 (+) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCU92_RS11025 (BCU92_11025) rplS 2362359..2362712 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCU92_RS11030 (BCU92_11030) yacG 2362987..2363184 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCU92_RS11035 (BCU92_11035) zapD 2363266..2364006 (-) 741 WP_010435917.1 cell division protein ZapD -
  BCU92_RS11040 (BCU92_11040) coaE 2364033..2364647 (-) 615 WP_010435920.1 dephospho-CoA kinase -
  BCU92_RS11045 (BCU92_11045) pilD 2364650..2365519 (-) 870 WP_102277664.1 prepilin peptidase Machinery gene
  BCU92_RS11050 (BCU92_11050) pilC 2365586..2366815 (-) 1230 WP_016791284.1 type II secretion system F family protein Machinery gene
  BCU92_RS11055 (BCU92_11055) pilB 2366831..2368516 (-) 1686 WP_016790036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCU92_RS11060 (BCU92_11060) pilA 2368517..2368936 (-) 420 WP_016790035.1 pilin Machinery gene
  BCU92_RS11065 (BCU92_11065) nadC 2369191..2370081 (-) 891 WP_016790034.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCU92_RS11070 (BCU92_11070) ampD 2370165..2370764 (+) 600 WP_016790757.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45093.98 Da        Isoelectric Point: 10.1000

>NTDB_id=1054616 BCU92_RS11050 WP_016791284.1 2365586..2366815(-) (pilC) [Vibrio cyclitrophicus strain 10N.286.52.C10]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQTKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATSL
VVHQLCQRSYSIRLSASRLVLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGSLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054616 BCU92_RS11050 WP_016791284.1 2365586..2366815(-) (pilC) [Vibrio cyclitrophicus strain 10N.286.52.C10]
ATGAGTAGCAAGTCCAAACAGTCACAATTAAAAAGCTATCACTGGAAAGGCATTAACAGCTCTGGCAAGAAAGTGTCTGG
GCAGACCTTAGCGCTTACTGAATTAGAAGTACGGGAAAAGCTCAAAGAACAGCATATCCAGACTAAGAAAATCAAAAAGA
AAAGTATTTCAGCCGTCACTCGTTTAACCCATAGAGTCAAAGCCAAAGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATCGTGCAAGCCATAAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCTAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGAGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACCGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCACTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTCACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCAGCCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTAGG
TGGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGTTCTGGTATTCCGATTCTAA
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAGTCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCT
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.25

97.8

0.775
  pilC Vibrio campbellii strain DS40M4

73.039

99.756

0.729
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Legionella pneumophila strain ERS1305867

42.145

98.044

0.413
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Pseudomonas stutzeri DSM 10701

40.404

96.822

0.391
  pilG Neisseria gonorrhoeae MS11

39.85

97.555

0.389
  pilG Neisseria meningitidis 44/76-A

39.599

97.555

0.386

Multiple sequence alignment