Detailed information NTG1054615

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCU92_RS11045
• Genome accession: NZ_CP170017
• Coordinates: 2364650..2365519 (-)
• Length: 289 a.a.
• NCBI ID: WP_102277664.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.52.C10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2359650..2370519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU92_RS11010 (BCU92_11010)	rpsP	2360705..2360953 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
BCU92_RS11015 (BCU92_11015)	rimM	2360978..2361532 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCU92_RS11020 (BCU92_11020)	trmD	2361559..2362299 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCU92_RS11025 (BCU92_11025)	rplS	2362359..2362712 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
BCU92_RS11030 (BCU92_11030)	yacG	2362987..2363184 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCU92_RS11035 (BCU92_11035)	zapD	2363266..2364006 (-)	741	WP_010435917.1	cell division protein ZapD	-
BCU92_RS11040 (BCU92_11040)	coaE	2364033..2364647 (-)	615	WP_010435920.1	dephospho-CoA kinase	-
BCU92_RS11045 (BCU92_11045)	pilD	2364650..2365519 (-)	870	WP_102277664.1	prepilin peptidase	Machinery gene
BCU92_RS11050 (BCU92_11050)	pilC	2365586..2366815 (-)	1230	WP_016791284.1	type II secretion system F family protein	Machinery gene
BCU92_RS11055 (BCU92_11055)	pilB	2366831..2368516 (-)	1686	WP_016790036.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCU92_RS11060 (BCU92_11060)	pilA	2368517..2368936 (-)	420	WP_016790035.1	pilin	Machinery gene
BCU92_RS11065 (BCU92_11065)	nadC	2369191..2370081 (-)	891	WP_016790034.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32548.70 Da
• Isoelectric Point: 7.9444

>NTDB_id=1054615 BCU92_RS11045 WP_102277664.1 2364650..2365519(-) (pilD) [Vibrio cyclitrophicus strain 10N.286.52.C10]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPTIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054615 BCU92_RS11045 WP_102277664.1 2364650..2365519(-) (pilD) [Vibrio cyclitrophicus strain 10N.286.52.C10]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAACGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCCATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	49.035	89.619	0.439