Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   BCU92_RS11055 Genome accession   NZ_CP170017
Coordinates   2366831..2368516 (-) Length   561 a.a.
NCBI ID   WP_016790036.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.52.C10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2361831..2373516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU92_RS11025 (BCU92_11025) rplS 2362359..2362712 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCU92_RS11030 (BCU92_11030) yacG 2362987..2363184 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCU92_RS11035 (BCU92_11035) zapD 2363266..2364006 (-) 741 WP_010435917.1 cell division protein ZapD -
  BCU92_RS11040 (BCU92_11040) coaE 2364033..2364647 (-) 615 WP_010435920.1 dephospho-CoA kinase -
  BCU92_RS11045 (BCU92_11045) pilD 2364650..2365519 (-) 870 WP_102277664.1 prepilin peptidase Machinery gene
  BCU92_RS11050 (BCU92_11050) pilC 2365586..2366815 (-) 1230 WP_016791284.1 type II secretion system F family protein Machinery gene
  BCU92_RS11055 (BCU92_11055) pilB 2366831..2368516 (-) 1686 WP_016790036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCU92_RS11060 (BCU92_11060) pilA 2368517..2368936 (-) 420 WP_016790035.1 pilin Machinery gene
  BCU92_RS11065 (BCU92_11065) nadC 2369191..2370081 (-) 891 WP_016790034.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCU92_RS11070 (BCU92_11070) ampD 2370165..2370764 (+) 600 WP_016790757.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BCU92_RS11075 (BCU92_11075) pdhR 2371246..2372007 (+) 762 WP_016768209.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 62044.81 Da        Isoelectric Point: 5.2073

>NTDB_id=1054617 BCU92_RS11055 WP_016790036.1 2366831..2368516(-) (pilB) [Vibrio cyclitrophicus strain 10N.286.52.C10]
MLTNLPTVLRQAGLLSLAQEQAVAEQVQASGISTPEALLVLDFFSGDSLANNIKTIFGLPLVQLANTDYETLCDQLGLRE
LITKYRAIPIAVSSSTLTLASADPTDLQAEDDFRFATGLQIELVVANYSELEGAIRKLYGRSISGQDSKRKEITQDELAN
LVKVSDDEITSIEDLSQDDSPVSRFINQILVDAVRKGASDIHFEPYEEHYRVRLRCDGILVEIQQPASHLSRRLSARLKI
LAKLDIAERRLPQDGRIKLRLNDELAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYSEAQKALYLNALKRPQGMI
LMTGPTGSGKTVSLYTGLRVLNTSERNISTAEDPVEINLCGINQVQVTPKIGFGFAEALRSFLRQDPDIVMVGEIRDLET
AEIAIKASQTGHLVLSTLHTNSAAETVTRLAHMGIEPFNLASSLSLIIAQRLARRLCNRCKTADDSPDIYLRHSIPNSQT
IYKANSQGCNECNQGYSGRVGIYEVMQFTDKLKTSLINKPNALAIEDLARREGMRTLQESGLDKLLEGTTSYQELQRVLY
I

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=1054617 BCU92_RS11055 WP_016790036.1 2366831..2368516(-) (pilB) [Vibrio cyclitrophicus strain 10N.286.52.C10]
GTGCTAACCAACCTCCCAACCGTTCTACGTCAGGCTGGCTTACTTAGCCTGGCTCAAGAACAAGCCGTTGCGGAACAAGT
ACAAGCTTCAGGTATTTCGACACCTGAAGCTTTGCTCGTTCTAGATTTCTTCAGCGGCGATTCCTTAGCAAACAACATTA
AAACCATCTTCGGCTTACCGTTAGTACAACTTGCCAATACGGACTATGAAACCTTATGTGACCAATTAGGGCTTCGCGAA
CTGATTACTAAATATCGTGCTATCCCGATTGCAGTTTCTAGCTCCACCCTCACACTCGCTTCTGCCGACCCTACGGATTT
ACAAGCTGAAGATGACTTCCGCTTTGCGACAGGATTACAGATTGAATTGGTTGTTGCTAATTACTCTGAATTAGAAGGCG
CGATACGCAAGCTGTATGGTCGATCTATTTCCGGGCAAGACTCTAAGCGTAAAGAGATCACCCAAGATGAGCTAGCTAAC
CTCGTGAAGGTATCTGACGACGAAATAACGTCGATTGAAGATCTCAGCCAAGACGACTCCCCTGTGAGTCGCTTTATCAA
TCAGATTCTGGTTGATGCGGTACGTAAAGGCGCATCGGACATCCATTTTGAGCCCTACGAAGAACACTACCGAGTGCGCC
TACGTTGCGATGGCATTCTTGTCGAGATCCAACAACCCGCCTCTCATTTAAGCCGTCGATTATCAGCGCGCTTAAAGATC
CTCGCAAAACTGGATATTGCAGAACGTCGCTTACCTCAAGATGGTCGTATTAAACTGCGTTTAAATGACGAACTGGCAAT
TGATATGCGCGTATCAACACTGCCTACCTTATGGGGCGAGAAAATCGTACTGCGATTGCTTGATAGCAGTGCGGCCAATC
TCGATATCGATAAGCTCGGTTACAGCGAGGCTCAAAAAGCCCTCTACCTCAATGCACTAAAGCGCCCGCAAGGGATGATC
TTAATGACCGGGCCAACCGGCAGCGGTAAAACGGTTTCTCTTTATACTGGGCTTCGAGTGCTCAACACCTCTGAACGCAA
CATCTCAACAGCTGAAGACCCAGTAGAGATTAACCTGTGTGGTATCAATCAGGTACAAGTGACACCTAAGATTGGCTTTG
GTTTCGCCGAGGCACTACGATCTTTTTTACGACAAGATCCAGACATCGTGATGGTTGGAGAAATCCGAGATTTAGAAACC
GCTGAAATCGCGATCAAAGCATCGCAAACAGGTCACTTGGTGCTTTCTACACTGCACACCAATTCTGCTGCTGAAACCGT
AACTCGGCTGGCTCATATGGGAATTGAACCCTTTAATCTTGCTTCGTCTTTAAGCTTGATTATTGCTCAGCGTCTTGCGA
GACGCTTGTGTAACCGCTGTAAAACCGCAGACGACTCACCAGACATTTATCTGCGCCACTCTATCCCAAACAGCCAAACC
ATCTACAAAGCCAACTCTCAAGGCTGTAATGAGTGTAACCAAGGTTACTCAGGTCGAGTGGGGATCTATGAAGTGATGCA
GTTTACCGACAAGCTAAAAACCAGCCTTATCAACAAACCCAATGCGCTAGCGATTGAAGATCTCGCGCGTCGAGAAGGCA
TGCGCACTCTGCAAGAGTCAGGTCTGGATAAATTGCTTGAAGGCACCACCAGCTATCAAGAGCTGCAACGTGTTCTGTAC
ATATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(188-455)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(11-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Vibrio cholerae strain A1552

73.936

100

0.743
  pilB Vibrio campbellii strain DS40M4

70.819

100

0.709
  pilB Vibrio parahaemolyticus RIMD 2210633

70.641

100

0.708
  pilB Acinetobacter baumannii D1279779

50.674

92.513

0.469
  pilB Legionella pneumophila strain ERS1305867

50.392

90.909

0.458
  pilB Acinetobacter baylyi ADP1

49.419

91.979

0.455
  pilF Neisseria gonorrhoeae MS11

42.908

100

0.431
  pilF Thermus thermophilus HB27

37.77

99.109

0.374

Multiple sequence alignment