Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCV29_RS07475 Genome accession   NZ_CP170001
Coordinates   1733089..1734318 (+) Length   409 a.a.
NCBI ID   WP_016794573.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.55.B4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1728089..1739318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV29_RS07455 (BCV29_07455) ampD 1729072..1729671 (-) 600 WP_016799547.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BCV29_RS07460 (BCV29_07460) nadC 1729755..1730645 (+) 891 WP_102312962.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCV29_RS07465 (BCV29_07465) - 1730899..1731384 (+) 486 WP_016794571.1 pilin -
  BCV29_RS07470 (BCV29_07470) pilB 1731389..1733074 (+) 1686 WP_016794572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCV29_RS07475 (BCV29_07475) pilC 1733089..1734318 (+) 1230 WP_016794573.1 type II secretion system F family protein Machinery gene
  BCV29_RS07480 (BCV29_07480) pilD 1734385..1735254 (+) 870 WP_102312963.1 prepilin peptidase Machinery gene
  BCV29_RS07485 (BCV29_07485) coaE 1735257..1735871 (+) 615 WP_016794575.1 dephospho-CoA kinase -
  BCV29_RS07490 (BCV29_07490) zapD 1735898..1736638 (+) 741 WP_010435917.1 cell division protein ZapD -
  BCV29_RS07495 (BCV29_07495) yacG 1736720..1736917 (+) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCV29_RS07500 (BCV29_07500) rplS 1737196..1737549 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCV29_RS07505 (BCV29_07505) trmD 1737609..1738349 (-) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCV29_RS07510 (BCV29_07510) rimM 1738376..1738930 (-) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCV29_RS07515 (BCV29_07515) rpsP 1738955..1739203 (-) 249 WP_004410028.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45191.14 Da        Isoelectric Point: 10.1000

>NTDB_id=1054277 BCV29_RS07475 WP_016794573.1 1733089..1734318(+) (pilC) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MSSKSKQSQLKNYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISSITRITHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATTL
VVHQLCLRSYSIRLSASRLVLRFPVLGSVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054277 BCV29_RS07475 WP_016794573.1 1733089..1734318(+) (pilC) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGTAAGAAAGTGTCTGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAGCATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCCTCAATCACTCGCATAACACACCGAGTCAAAGCTAAGGACATCACCGTTTTAACTCGGCAACTCGCGACT
ATGTTGGCTACGGGTGTGCCTATTGTACAAGCCATCAAGCTAGTCTCAGACAATCACCGCAAAGCTGAAATGAAATCTAT
TTTGTCTCATATATGTAAGGGCGTTGAGGCAGGAACCCCGATATCAAAAGCAATGCGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACGGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTAACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTATCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCACGCTG
GTTGTTCATCAACTGTGCCTACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTTGG
TAGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGCTCTGGTATTCCCATCTTAA
TGAGCCTCAAAACCACCGCAAAGACTGCAGGTAATCTGCATTATGAATCTGCGATCATCGAGGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATCGCGATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAATTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.5

97.8

0.778
  pilC Vibrio campbellii strain DS40M4

73.645

99.267

0.731
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Legionella pneumophila strain ERS1305867

42.394

98.044

0.416
  pilC Acinetobacter baumannii D1279779

41.337

98.778

0.408
  pilC Pseudomonas stutzeri DSM 10701

40.594

98.778

0.401
  pilG Neisseria gonorrhoeae MS11

40.852

97.555

0.399
  pilG Neisseria meningitidis 44/76-A

40.602

97.555

0.396

Multiple sequence alignment