Detailed information NTG1054278

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCV29_RS07480
• Genome accession: NZ_CP170001
• Coordinates: 1734385..1735254 (+)
• Length: 289 a.a.
• NCBI ID: WP_102312963.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.55.B4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1729385..1740254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV29_RS07460 (BCV29_07460)	nadC	1729755..1730645 (+)	891	WP_102312962.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BCV29_RS07465 (BCV29_07465)	-	1730899..1731384 (+)	486	WP_016794571.1	pilin	-
BCV29_RS07470 (BCV29_07470)	pilB	1731389..1733074 (+)	1686	WP_016794572.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCV29_RS07475 (BCV29_07475)	pilC	1733089..1734318 (+)	1230	WP_016794573.1	type II secretion system F family protein	Machinery gene
BCV29_RS07480 (BCV29_07480)	pilD	1734385..1735254 (+)	870	WP_102312963.1	prepilin peptidase	Machinery gene
BCV29_RS07485 (BCV29_07485)	coaE	1735257..1735871 (+)	615	WP_016794575.1	dephospho-CoA kinase	-
BCV29_RS07490 (BCV29_07490)	zapD	1735898..1736638 (+)	741	WP_010435917.1	cell division protein ZapD	-
BCV29_RS07495 (BCV29_07495)	yacG	1736720..1736917 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCV29_RS07500 (BCV29_07500)	rplS	1737196..1737549 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
BCV29_RS07505 (BCV29_07505)	trmD	1737609..1738349 (-)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCV29_RS07510 (BCV29_07510)	rimM	1738376..1738930 (-)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCV29_RS07515 (BCV29_07515)	rpsP	1738955..1739203 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32567.81 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054278 BCV29_RS07480 WP_102312963.1 1734385..1735254(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.55.B4]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFPQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054278 BCV29_RS07480 WP_102312963.1 1734385..1735254(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.55.B4]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAGTATTTTCCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGTCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGGAAGTGCCACAGCTGTGCTAATCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTGCTGCCGGATCAAATTACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443