Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACEZDF_RS14635 Genome accession   NZ_CP169539
Coordinates   3192777..3193886 (-) Length   369 a.a.
NCBI ID   WP_054579448.1    Uniprot ID   A0AAW9BQB8
Organism   Vibrio alginolyticus strain BR53     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3187777..3198886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS14605 (ACEZDF_14605) hemF 3188239..3189156 (-) 918 WP_054579451.1 oxygen-dependent coproporphyrinogen oxidase -
  ACEZDF_RS14610 (ACEZDF_14610) - 3189204..3189761 (-) 558 WP_033906571.1 L-threonylcarbamoyladenylate synthase -
  ACEZDF_RS14615 (ACEZDF_14615) purE 3189961..3190446 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACEZDF_RS14620 (ACEZDF_14620) - 3190451..3191584 (+) 1134 WP_054579450.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACEZDF_RS14625 (ACEZDF_14625) - 3191650..3192219 (-) 570 WP_054579449.1 type I DNA topoisomerase -
  ACEZDF_RS14630 (ACEZDF_14630) - 3192295..3192774 (-) 480 WP_005379074.1 DUF494 family protein -
  ACEZDF_RS14635 (ACEZDF_14635) dprA 3192777..3193886 (-) 1110 WP_054579448.1 DNA-processing protein DprA Machinery gene
  ACEZDF_RS14640 (ACEZDF_14640) - 3193870..3194964 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  ACEZDF_RS14645 (ACEZDF_14645) def 3195103..3195621 (+) 519 WP_005379068.1 peptide deformylase -
  ACEZDF_RS14650 (ACEZDF_14650) fmt 3195655..3196602 (+) 948 WP_054579447.1 methionyl-tRNA formyltransferase -
  ACEZDF_RS14655 (ACEZDF_14655) rsmB 3196683..3197966 (+) 1284 WP_033906577.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39992.73 Da        Isoelectric Point: 6.8192

>NTDB_id=1051956 ACEZDF_RS14635 WP_054579448.1 3192777..3193886(-) (dprA) [Vibrio alginolyticus strain BR53]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPCNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1051956 ACEZDF_RS14635 WP_054579448.1 3192777..3193886(-) (dprA) [Vibrio alginolyticus strain BR53]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCATGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAACCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379
  dprA Acinetobacter baylyi ADP1

38.44

97.29

0.374

Multiple sequence alignment