Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEZDF_RS02850 Genome accession   NZ_CP169539
Coordinates   585644..586867 (-) Length   407 a.a.
NCBI ID   WP_005379974.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain BR53     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 580644..591867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS02820 (ACEZDF_02820) trmD 581163..581924 (+) 762 WP_054579072.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACEZDF_RS02825 (ACEZDF_02825) rplS 581966..582319 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  ACEZDF_RS02830 (ACEZDF_02830) yacG 582974..583168 (-) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  ACEZDF_RS02835 (ACEZDF_02835) zapD 583327..584067 (-) 741 WP_054579074.1 cell division protein ZapD -
  ACEZDF_RS02840 (ACEZDF_02840) coaE 584095..584709 (-) 615 WP_017635920.1 dephospho-CoA kinase -
  ACEZDF_RS02845 (ACEZDF_02845) pilD 584710..585579 (-) 870 WP_054579075.1 A24 family peptidase Machinery gene
  ACEZDF_RS02850 (ACEZDF_02850) pilC 585644..586867 (-) 1224 WP_005379974.1 type II secretion system F family protein Machinery gene
  ACEZDF_RS02855 (ACEZDF_02855) pilB 586891..588576 (-) 1686 WP_054579076.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEZDF_RS02860 (ACEZDF_02860) pilA 588585..589019 (-) 435 WP_054579077.1 type IV pilin protein Machinery gene
  ACEZDF_RS02865 (ACEZDF_02865) nadC 589283..590170 (-) 888 WP_005379983.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACEZDF_RS02870 (ACEZDF_02870) ampD 590263..590814 (+) 552 WP_005386614.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45311.46 Da        Isoelectric Point: 10.3992

>NTDB_id=1051934 ACEZDF_RS02850 WP_005379974.1 585644..586867(-) (pilC) [Vibrio alginolyticus strain BR53]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKARDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLTLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1051934 ACEZDF_RS02850 WP_005379974.1 585644..586867(-) (pilC) [Vibrio alginolyticus strain BR53]
ATGAAAACCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
TCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TTTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGCCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACCGGTGTGCCCTTAGTTCAGGCTTTAAAATTGGTTTCAGAAAATCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGGACGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGATCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCAGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACGAGGC
AAGTATTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATTAGTTTATTCATCTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAACGCTCAATCGATCTGTGCTTAAATTTCCTGTCCTTGGGCCTGT
ATTATCAAAAGCAGCGATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGCATTCCAATTCTAACCAGTT
TAAAAACTACATCAAAAACATCAGGAAACTTGCACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTAGCCATGCGCAACTGTAATGTGTTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACAATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCACTAATTATCGTTTTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

87.224

100

0.872
  pilC Vibrio cholerae strain A1552

73.827

99.509

0.735
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.541

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment