Detailed information NTG1051933

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEZDF_RS02845
• Genome accession: NZ_CP169539
• Coordinates: 584710..585579 (-)
• Length: 289 a.a.
• NCBI ID: WP_054579075.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain BR53
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 579710..590579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEZDF_RS02810 (ACEZDF_02810)	rpsP	580309..580557 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
ACEZDF_RS02815 (ACEZDF_02815)	rimM	580587..581135 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
ACEZDF_RS02820 (ACEZDF_02820)	trmD	581163..581924 (+)	762	WP_054579072.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACEZDF_RS02825 (ACEZDF_02825)	rplS	581966..582319 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
ACEZDF_RS02830 (ACEZDF_02830)	yacG	582974..583168 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
ACEZDF_RS02835 (ACEZDF_02835)	zapD	583327..584067 (-)	741	WP_054579074.1	cell division protein ZapD	-
ACEZDF_RS02840 (ACEZDF_02840)	coaE	584095..584709 (-)	615	WP_017635920.1	dephospho-CoA kinase	-
ACEZDF_RS02845 (ACEZDF_02845)	pilD	584710..585579 (-)	870	WP_054579075.1	A24 family peptidase	Machinery gene
ACEZDF_RS02850 (ACEZDF_02850)	pilC	585644..586867 (-)	1224	WP_005379974.1	type II secretion system F family protein	Machinery gene
ACEZDF_RS02855 (ACEZDF_02855)	pilB	586891..588576 (-)	1686	WP_054579076.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACEZDF_RS02860 (ACEZDF_02860)	pilA	588585..589019 (-)	435	WP_054579077.1	type IV pilin protein	Machinery gene
ACEZDF_RS02865 (ACEZDF_02865)	nadC	589283..590170 (-)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32569.72 Da
• Isoelectric Point: 7.0197

>NTDB_id=1051933 ACEZDF_RS02845 WP_054579075.1 584710..585579(-) (pilD) [Vibrio alginolyticus strain BR53]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPATLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=1051933 ACEZDF_RS02845 WP_054579075.1 584710..585579(-) (pilD) [Vibrio alginolyticus strain BR53]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCACTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGCTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAAATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.311	100	0.903
pilD	Vibrio cholerae strain A1552	71.875	99.654	0.716
pilD	Acinetobacter baumannii D1279779	51.292	93.772	0.481
pilD	Acinetobacter nosocomialis M2	50.923	93.772	0.478
pilD	Neisseria gonorrhoeae MS11	47.826	95.502	0.457