Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEZDF_RS02860 | Genome accession | NZ_CP169539 |
| Coordinates | 588585..589019 (-) | Length | 144 a.a. |
| NCBI ID | WP_054579077.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain BR53 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 583585..594019
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEZDF_RS02840 (ACEZDF_02840) | coaE | 584095..584709 (-) | 615 | WP_017635920.1 | dephospho-CoA kinase | - |
| ACEZDF_RS02845 (ACEZDF_02845) | pilD | 584710..585579 (-) | 870 | WP_054579075.1 | A24 family peptidase | Machinery gene |
| ACEZDF_RS02850 (ACEZDF_02850) | pilC | 585644..586867 (-) | 1224 | WP_005379974.1 | type II secretion system F family protein | Machinery gene |
| ACEZDF_RS02855 (ACEZDF_02855) | pilB | 586891..588576 (-) | 1686 | WP_054579076.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACEZDF_RS02860 (ACEZDF_02860) | pilA | 588585..589019 (-) | 435 | WP_054579077.1 | type IV pilin protein | Machinery gene |
| ACEZDF_RS02865 (ACEZDF_02865) | nadC | 589283..590170 (-) | 888 | WP_005379983.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACEZDF_RS02870 (ACEZDF_02870) | ampD | 590263..590814 (+) | 552 | WP_005386614.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACEZDF_RS02875 (ACEZDF_02875) | pdhR | 591220..591987 (+) | 768 | WP_005379989.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 15126.34 Da Isoelectric Point: 9.0011
>NTDB_id=1051936 ACEZDF_RS02860 WP_054579077.1 588585..589019(-) (pilA) [Vibrio alginolyticus strain BR53]
MKNSKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKSYVTKSELASGATTVRNLLTNIDMYQQENGTYVGMTLPKVGAST
TMSGLGDLALANLTVSSADATFTFDNSSVNTAVITYSKSSSGWTCLITPNSATAITAETRPKGC
MKNSKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKSYVTKSELASGATTVRNLLTNIDMYQQENGTYVGMTLPKVGAST
TMSGLGDLALANLTVSSADATFTFDNSSVNTAVITYSKSSSGWTCLITPNSATAITAETRPKGC
Nucleotide
Download Length: 435 bp
>NTDB_id=1051936 ACEZDF_RS02860 WP_054579077.1 588585..589019(-) (pilA) [Vibrio alginolyticus strain BR53]
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATTGAATTAATGATTGTGGTGGCGATTATTGGAGTGTT
ATCAGCAGTCGCAATCCCTGCATATAAAAGTTATGTGACAAAAAGCGAATTGGCCTCTGGCGCAACTACAGTTAGAAACC
TTCTAACAAACATTGATATGTACCAACAGGAAAATGGGACATATGTAGGAATGACACTACCTAAAGTTGGCGCATCTACA
ACTATGAGCGGACTTGGAGACTTAGCACTAGCTAATTTAACGGTGAGCTCAGCAGATGCTACTTTCACATTTGATAACTC
TTCAGTAAACACCGCCGTTATAACGTACAGTAAATCGTCTTCAGGCTGGACATGTTTAATTACTCCAAACAGTGCAACAG
CAATTACCGCAGAAACTCGACCAAAAGGCTGCTGA
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATTGAATTAATGATTGTGGTGGCGATTATTGGAGTGTT
ATCAGCAGTCGCAATCCCTGCATATAAAAGTTATGTGACAAAAAGCGAATTGGCCTCTGGCGCAACTACAGTTAGAAACC
TTCTAACAAACATTGATATGTACCAACAGGAAAATGGGACATATGTAGGAATGACACTACCTAAAGTTGGCGCATCTACA
ACTATGAGCGGACTTGGAGACTTAGCACTAGCTAATTTAACGGTGAGCTCAGCAGATGCTACTTTCACATTTGATAACTC
TTCAGTAAACACCGCCGTTATAACGTACAGTAAATCGTCTTCAGGCTGGACATGTTTAATTACTCCAAACAGTGCAACAG
CAATTACCGCAGAAACTCGACCAAAAGGCTGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
53.03 |
91.667 |
0.486 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.842 |
100 |
0.389 |
| pilA | Vibrio cholerae strain A1552 |
36.842 |
100 |
0.389 |
| pilA | Vibrio cholerae C6706 |
36.842 |
100 |
0.389 |
| pilA | Pseudomonas aeruginosa PAK |
34.641 |
100 |
0.368 |