Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACEWX4_RS13190 Genome accession   NZ_CP169369
Coordinates   2743502..2745565 (-) Length   687 a.a.
NCBI ID   WP_374855090.1    Uniprot ID   -
Organism   Acinetobacter indicus strain AIBD14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2738502..2750565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWX4_RS13175 (ACEWX4_13175) - 2740969..2741805 (-) 837 WP_374855086.1 hypothetical protein -
  ACEWX4_RS13180 (ACEWX4_13180) aroB 2741818..2742900 (-) 1083 WP_374855088.1 3-dehydroquinate synthase -
  ACEWX4_RS13185 (ACEWX4_13185) aroK 2742923..2743465 (-) 543 WP_075167858.1 shikimate kinase AroK -
  ACEWX4_RS13190 (ACEWX4_13190) pilQ 2743502..2745565 (-) 2064 WP_374855090.1 type IV pilus secretin PilQ Machinery gene
  ACEWX4_RS13195 (ACEWX4_13195) pilP 2745581..2746108 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  ACEWX4_RS13200 (ACEWX4_13200) pilO 2746108..2746827 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACEWX4_RS13205 (ACEWX4_13205) pilN 2746824..2747459 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  ACEWX4_RS13210 (ACEWX4_13210) pilM 2747459..2748517 (-) 1059 WP_374855093.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74807.67 Da        Isoelectric Point: 4.9785

>NTDB_id=1051075 ACEWX4_RS13190 WP_374855090.1 2743502..2745565(-) (pilQ) [Acinetobacter indicus strain AIBD14]
MNNTVKDFIFGDGITMNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLV
LDFDKAQQTLKQASIPVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQPAATPVAVQQTAQGVSN
IGFQRGAEGEGQVVIDLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGS
YEYMAYQAENKLSISLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVP
WDQALDIILKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITQNKGASNSS
GSGSNDGRESLLSSRGSVSIDARTNTLIVNDTQDFIDKIRNMVDLLDVQVKQVMVEARIVTAQTDFSRELGIRWSANKLN
NRPVWGGDFQPSFDLGVDLGTGSAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQIPYQT
WSAESGTTTSFVDANLKLEVTPSITPDGKVQMELKIEKDTVGQLTQAGYLINTNELETNVLVNDGETVVLGGIFDDIQQN
QNERVPFLGELPVVGNLFRNNVKTNTQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=1051075 ACEWX4_RS13190 WP_374855090.1 2743502..2745565(-) (pilQ) [Acinetobacter indicus strain AIBD14]
ATGAATAATACTGTGAAAGATTTTATTTTTGGGGATGGCATTACAATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGC
TGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCATTACCAATATTGTACCAATGCAAATTCCAGGACAAG
GTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTGCAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTG
CTGGATTTTGATAAAGCCCAGCAAACCTTAAAACAGGCCAGCATTCCGGTTGCGACTCGGGAAGCCAGCTCGGTTGATGT
CAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGAAGCGGGTGCTTTTACTACCCGTGTCGAAGGCAATA
CTTTTATTCTTAAAATTAACAGCACTCAGCCAGCCGCAACACCAGTAGCTGTACAGCAGACGGCTCAAGGCGTATCGAAT
ATCGGCTTCCAGCGTGGTGCAGAAGGGGAAGGTCAGGTAGTAATTGACCTGGCAGGCAGCAATACCCCGGTCGATGTGCA
ACAGCAAGGCAGTAAAATTATTGTCCGTACTTTGGGCAATAAAATTCCTGCGCATCTGGCACGCCGTTTAAATGTCAATG
ATTTTGCCACGCCGGTATCTACCATTGATGCGCAAAATGATGGTGGTAATGGGGTAATTACTATTCAGTCTGCCGGAAGC
TATGAATATATGGCGTATCAGGCGGAAAATAAACTGAGCATTAGCCTGAAACGCCCGGTAGATAAGAACCCGTTTAAACC
ACGTGCAGCACAAAGCTATACTGGCAAAAAGATTTCTTTAGATTTCCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTAC
TGGCGGATTTTACTGGAATTAACATGGTTGCCGCCGATACGGTACAAGGCAATATCACCTTACGTCTCAAAGATGTGCCG
TGGGATCAGGCGCTGGATATTATTTTAAAAACCAAAAATCTGGATAAACGCCGTAATGGCAATGTGATCTGGATTGCACC
CGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGATTGCTCAAAGCGTCAAGCTGGCGCCGCTGCAAACCG
AATATATCCAGTTAAATTATGCCAAGGCTGCTGATATCGAGAAACTGATTACTCAGAATAAAGGCGCCTCAAACTCTAGC
GGATCAGGCAGTAATGATGGGCGAGAAAGTTTATTGAGTTCTCGAGGGTCAGTTTCGATTGATGCCCGTACCAATACCTT
AATTGTGAATGATACTCAAGACTTTATTGATAAAATTCGAAATATGGTGGATTTGCTAGATGTTCAGGTCAAGCAAGTCA
TGGTAGAGGCTCGTATTGTTACCGCTCAAACTGACTTTTCCCGTGAGTTGGGGATTCGCTGGAGTGCCAATAAATTAAAT
AATCGCCCGGTATGGGGAGGAGACTTCCAACCAAGCTTTGACTTGGGGGTAGATTTAGGTACAGGCTCTGCGGGGACATT
CAACTTTGGGTTATTGAAAATTTCAGATTATATGCTGAATCTGGAGTTAACTGCTTTACAGGCGGATGGGCATGGGGAAG
TATTGTCTGCACCTAAAGTCCTGACAGGCGATAAACAGAAAGCCTATATTCTACGAGGTGATCAAATTCCATATCAGACT
TGGAGTGCAGAATCAGGAACAACCACAAGTTTTGTTGACGCCAACTTAAAACTTGAAGTGACCCCAAGCATTACTCCAGA
TGGAAAAGTCCAAATGGAATTAAAAATTGAAAAAGATACAGTAGGGCAGTTGACTCAAGCAGGTTATCTCATCAATACCA
ATGAATTGGAAACCAATGTGTTAGTCAATGATGGTGAAACTGTCGTGCTCGGTGGTATTTTTGATGATATTCAGCAGAAC
CAGAATGAGCGGGTTCCATTTTTAGGGGAATTGCCAGTGGTGGGTAACTTGTTTAGAAATAATGTGAAAACCAATACTCA
AACTGAGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(374-452)

Secretin and TonB N terminus short domain (STN)

(305-347)

Bacterial type II and III secretion system protein (Secretin)

(525-679)

AMIN domain (AMIN)

(55-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

66.207

100

0.699
  pilQ Acinetobacter baumannii strain A118

66.069

100

0.697
  comQ Acinetobacter baylyi ADP1

64.739

100

0.668
  pilQ Pseudomonas aeruginosa PAK

41.168

99.709

0.41
  pilQ Legionella pneumophila strain ERS1305867

38.54

99.709

0.384
  pilQ Legionella pneumophila strain Lp02

38.54

99.709

0.384

Multiple sequence alignment