Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACEQ85_RS06230 Genome accession   NZ_CP168966
Coordinates   1319715..1320941 (+) Length   408 a.a.
NCBI ID   WP_032005095.1    Uniprot ID   A0A010JK15
Organism   Acinetobacter pittii strain LS-AP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314715..1325941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEQ85_RS06195 (ACEQ85_06195) rimP 1315386..1315910 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  ACEQ85_RS06215 (ACEQ85_06215) secG 1316548..1316877 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  ACEQ85_RS06220 (ACEQ85_06220) tpiA 1316890..1317684 (-) 795 WP_373883533.1 triose-phosphate isomerase -
  ACEQ85_RS06225 (ACEQ85_06225) pilB 1317976..1319688 (+) 1713 WP_373883534.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACEQ85_RS06230 (ACEQ85_06230) pilC 1319715..1320941 (+) 1227 WP_032005095.1 type II secretion system F family protein Machinery gene
  ACEQ85_RS06235 (ACEQ85_06235) pilD 1320941..1321801 (+) 861 WP_373883535.1 A24 family peptidase Machinery gene
  ACEQ85_RS06240 (ACEQ85_06240) coaE 1321803..1322399 (+) 597 WP_311078292.1 dephospho-CoA kinase -
  ACEQ85_RS06245 (ACEQ85_06245) - 1322396..1323310 (-) 915 WP_005079347.1 DMT family transporter -
  ACEQ85_RS06250 (ACEQ85_06250) rlmB 1323346..1324095 (-) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACEQ85_RS06255 (ACEQ85_06255) - 1324198..1324524 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  ACEQ85_RS06260 (ACEQ85_06260) - 1324601..1325911 (-) 1311 WP_373883536.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45013.42 Da        Isoelectric Point: 9.8207

>NTDB_id=1048976 ACEQ85_RS06230 WP_032005095.1 1319715..1320941(+) (pilC) [Acinetobacter pittii strain LS-AP]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1048976 ACEQ85_RS06230 WP_032005095.1 1319715..1320941(+) (pilC) [Acinetobacter pittii strain LS-AP]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTCGAAGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGCGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGGGCAATTATTGCC
GCATTTCTGGAAGCCAAGAAGCGTAGTAAGAAATTTCGTGATGGTTTAGACAAACTCACCCTGAAACTACCTATTTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACTACGTTTGCCGCAGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGAT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010JK15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment